Analysis of interatomic Contacts of Structural Units in PDB entry:
3BPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BPD entry

There are 14 chains in PDB entry 3BPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1GLU 91
B
 SER 0VAL 90
C
 SER 0VAL 90
D
 LEU 1GLU 91
E
 SER 0VAL 90
F
 SER 0GLU 91
G
 SER 0VAL 90
H
 SER 0VAL 90
I
 LEU 1VAL 90
J
 SER 0VAL 90
K
 LEU 1GLU 91
L
 SER 0VAL 90
M
 SER 0VAL 90
N
 LEU 1VAL 90
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3BPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 28Right-handed alpha
Helix 2
2
A
59 69Right-handed alpha
Helix 3
3
B
18 28Right-handed alpha
Helix 4
4
B
59 70Right-handed alpha
Helix 5
5
C
18 28Right-handed alpha
Helix 6
6
C
59 70Right-handed alpha
Helix 7
7
D
18 28Right-handed alpha
Helix 8
8
D
59 70Right-handed alpha
Helix 9
9
E
18 28Right-handed alpha
Helix 10
10
E
59 69Right-handed alpha
Helix 11
11
F
18 28Right-handed alpha
Helix 12
12
F
59 70Right-handed alpha
Helix 13
13
G
18 28Right-handed alpha
Helix 14
14
G
59 70Right-handed alpha
Helix 15
15
H
18 27Right-handed alpha
Helix 16
16
H
59 70Right-handed alpha
Helix 17
17
I
18 28Right-handed alpha
Helix 18
18
I
59 69Right-handed alpha
Helix 19
19
J
18 27Right-handed alpha
Helix 20
20
J
59 70Right-handed alpha
Helix 21
21
K
18 28Right-handed alpha
Helix 22
22
K
59 70Right-handed alpha
Helix 23
23
L
18 28Right-handed alpha
Helix 24
24
L
59 70Right-handed alpha
Helix 25
25
M
18 28Right-handed alpha
Helix 26
26
M
59 70Right-handed alpha
Helix 27
27
N
18 28Right-handed alpha
Helix 28
28
N
59 69Right-handed alpha
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There are 2 sheets in PDB entry 3BPD. Click on sheet of interest to get list of strands forming it: A, B,

There are 29 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 14first strand
Strand 2
A
46 58anti-parallel
Strand 3
A
32 42anti-parallel
Strand 4
B
73 83anti-parallel
Strand 5
B
4 14anti-parallel
Strand 6
B
46 55anti-parallel
Strand 7
B
32 42anti-parallel
Strand 8
C
73 83anti-parallel
Strand 9
C
4 14anti-parallel
Strand 10
C
46 55anti-parallel
Strand 11
C
32 42anti-parallel
Strand 12
D
73 83anti-parallel
Strand 13
D
4 14anti-parallel
Strand 14
D
46 55anti-parallel
Strand 15
D
32 42anti-parallel
Strand 16
E
73 83anti-parallel
Strand 17
E
4 13anti-parallel
Strand 18
E
47 55anti-parallel
Strand 19
E
32 42anti-parallel
Strand 20
F
73 83anti-parallel
Strand 21
F
4 14anti-parallel
Strand 22
F
46 58anti-parallel
Strand 23
F
32 42anti-parallel
Strand 24
G
73 83anti-parallel
Strand 25
G
4 14anti-parallel
Strand 26
G
46 55anti-parallel
Strand 27
G
32 42anti-parallel
Strand 28
A
73 83anti-parallel
Strand 29
A
4 14anti-parallel
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There are 29 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 14first strand
Strand 2
H
46 55anti-parallel
Strand 3
H
32 42anti-parallel
Strand 4
N
73 83anti-parallel
Strand 5
N
4 14anti-parallel
Strand 6
N
46 55anti-parallel
Strand 7
N
32 42anti-parallel
Strand 8
M
73 83anti-parallel
Strand 9
M
4 14anti-parallel
Strand 10
M
46 55anti-parallel
Strand 11
M
32 42anti-parallel
Strand 12
L
73 83anti-parallel
Strand 13
L
4 14anti-parallel
Strand 14
L
46 55anti-parallel
Strand 15
L
32 42anti-parallel
Strand 16
K
73 83anti-parallel
Strand 17
K
4 14anti-parallel
Strand 18
K
46 55anti-parallel
Strand 19
K
32 42anti-parallel
Strand 20
J
73 83anti-parallel
Strand 21
J
4 14anti-parallel
Strand 22
J
46 55anti-parallel
Strand 23
J
32 42anti-parallel
Strand 24
I
73 83anti-parallel
Strand 25
I
4 14anti-parallel
Strand 26
I
46 55anti-parallel
Strand 27
I
32 42anti-parallel
Strand 28
H
74 83anti-parallel
Strand 29
H
4 14anti-parallel
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