Analysis of interatomic Contacts of Structural Units in PDB entry:
3BPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BPM entry

There are 4 chains in PDB entry 3BPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 8GLU 250
B
 GLU 9LEU 249
D
 LEU 2LEU 3
C
 LEU 2LEU 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3BPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 20Right-handed alpha
Helix 2
2
A
34 36Right-handed 310
Helix 3
3
A
50 69Right-handed alpha
Helix 4
4
A
75 83Right-handed alpha
Helix 5
5
A
87 91Right-handed 310
Helix 6
6
A
93 104Right-handed alpha
Helix 7
7
A
124 128Right-handed 310
Helix 8
8
A
144 152Right-handed alpha
Helix 9
9
A
162 168Right-handed 310
Helix 10
10
A
236 240Right-handed 310
Helix 11
11
B
11 20Right-handed alpha
Helix 12
12
B
34 36Right-handed 310
Helix 13
13
B
50 69Right-handed alpha
Helix 14
14
B
75 83Right-handed alpha
Helix 15
15
B
87 91Right-handed 310
Helix 16
16
B
93 104Right-handed alpha
Helix 17
17
B
124 128Right-handed 310
Helix 18
18
B
141 143Right-handed 310
Helix 19
19
B
144 152Right-handed alpha
Helix 20
20
B
162 168Right-handed alpha
Helix 21
21
B
236 240Right-handed 310
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There are 6 sheets in PDB entry 3BPM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
136 139parallel
Strand 3
A
244 248anti-parallel
Strand 4
A
155 159anti-parallel
Strand 5
A
183 196anti-parallel
Strand 6
A
31 32anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
136 139parallel
Strand 3
A
244 248anti-parallel
Strand 4
A
155 159anti-parallel
Strand 5
A
183 196anti-parallel
Strand 6
A
203 212anti-parallel
Strand 7
A
224 229anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
131 132anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
183 193anti-parallel
Strand 3
B
155 159anti-parallel
Strand 4
B
244 248anti-parallel
Strand 5
B
136 139anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
183 193anti-parallel
Strand 3
B
206 212anti-parallel
Strand 4
B
224 229anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
131 132anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il