Analysis of interatomic Contacts of Structural Units in PDB entry:
3BPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BPR entry

There are 4 chains in PDB entry 3BPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 575ASP 863
B
 LYS 576ASP 863
C
 ASN 575ASP 863
D
 ASN 575ASP 863
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3BPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
583 585Right-handed 310
Helix 2
2
A
631 644Right-handed alpha
Helix 3
3
A
678 687Right-handed alpha
Helix 4
4
A
696 717Right-handed alpha
Helix 5
5
A
725 727Right-handed 310
Helix 6
6
A
763 767Right-handed 310
Helix 7
7
A
768 775Right-handed alpha
Helix 8
8
A
778 795Right-handed alpha
Helix 9
9
A
805 807Right-handed 310
Helix 10
10
A
808 815Right-handed alpha
Helix 11
11
A
826 836Right-handed alpha
Helix 12
12
A
840 844Right-handed 310
Helix 13
13
A
846 861Right-handed alpha
Helix 14
14
B
583 585Right-handed 310
Helix 15
15
B
631 644Right-handed alpha
Helix 16
16
B
678 686Right-handed alpha
Helix 17
17
B
696 717Right-handed alpha
Helix 18
18
B
725 727Right-handed 310
Helix 19
19
B
763 767Right-handed 310
Helix 20
20
B
768 775Right-handed alpha
Helix 21
21
B
778 795Right-handed alpha
Helix 22
22
B
805 807Right-handed 310
Helix 23
23
B
808 815Right-handed alpha
Helix 24
24
B
826 836Right-handed alpha
Helix 25
25
B
840 844Right-handed 310
Helix 26
26
B
846 861Right-handed alpha
Helix 27
27
C
583 585Right-handed 310
Helix 28
28
C
631 644Right-handed alpha
Helix 29
29
C
678 686Right-handed alpha
Helix 30
30
C
696 717Right-handed alpha
Helix 31
31
C
725 727Right-handed 310
Helix 32
32
C
763 767Right-handed 310
Helix 33
33
C
768 775Right-handed alpha
Helix 34
34
C
778 796Right-handed alpha
Helix 35
35
C
805 807Right-handed 310
Helix 36
36
C
808 815Right-handed alpha
Helix 37
37
C
826 836Right-handed alpha
Helix 38
38
C
840 844Right-handed 310
Helix 39
39
C
846 861Right-handed alpha
Helix 40
40
D
583 585Right-handed 310
Helix 41
41
D
631 644Right-handed alpha
Helix 42
42
D
678 687Right-handed alpha
Helix 43
43
D
696 717Right-handed alpha
Helix 44
44
D
725 727Right-handed 310
Helix 45
45
D
763 767Right-handed 310
Helix 46
46
D
768 775Right-handed alpha
Helix 47
47
D
778 796Right-handed alpha
Helix 48
48
D
805 807Right-handed 310
Helix 49
49
D
808 815Right-handed alpha
Helix 50
50
D
826 836Right-handed alpha
Helix 51
51
D
840 844Right-handed 310
Helix 52
52
D
846 861Right-handed alpha
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There are 8 sheets in PDB entry 3BPR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 595first strand
Strand 2
A
600 607anti-parallel
Strand 3
A
613 620anti-parallel
Strand 4
A
668 672anti-parallel
Strand 5
A
654 656anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
729 731first strand
Strand 2
A
737 739anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 594first strand
Strand 2
B
600 607anti-parallel
Strand 3
B
613 620anti-parallel
Strand 4
B
668 672anti-parallel
Strand 5
B
654 656anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
729 731first strand
Strand 2
B
737 739anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
587 595first strand
Strand 2
C
600 607anti-parallel
Strand 3
C
613 620anti-parallel
Strand 4
C
668 672anti-parallel
Strand 5
C
654 656anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
729 731first strand
Strand 2
C
737 739anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
587 595first strand
Strand 2
D
600 607anti-parallel
Strand 3
D
613 620anti-parallel
Strand 4
D
668 672anti-parallel
Strand 5
D
654 656anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
729 731first strand
Strand 2
D
737 739anti-parallel
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