Analysis of interatomic Contacts of Structural Units in PDB entry:
3BQ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BQ9 entry

There are 2 chains in PDB entry 3BQ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1THR 450
B
 SER 1THR 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 3BQ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed 310
Helix 2
2
A
15 23Right-handed alpha
Helix 3
3
A
24 26Right-handed 310
Helix 4
4
A
27 43Right-handed alpha
Helix 5
5
A
80 82Right-handed 310
Helix 6
6
A
90 111Right-handed alpha
Helix 7
7
A
112 119Right-handed alpha
Helix 8
8
A
120 135Right-handed alpha
Helix 9
9
A
156 173Right-handed alpha
Helix 10
10
A
183 186Right-handed 310
Helix 11
11
A
187 200Right-handed alpha
Helix 12
12
A
233 245Right-handed alpha
Helix 13
13
A
254 269Right-handed alpha
Helix 14
14
A
270 274Right-handed 310
Helix 15
15
A
285 287Right-handed 310
Helix 16
16
A
288 303Right-handed alpha
Helix 17
17
A
306 311Right-handed 310
Helix 18
18
A
317 339Right-handed alpha
Helix 19
19
A
352 356Right-handed 310
Helix 20
20
A
362 368Right-handed alpha
Helix 21
21
A
376 397Right-handed alpha
Helix 22
22
A
397 408Right-handed alpha
Helix 23
23
A
415 432Right-handed alpha
Helix 24
24
B
9 14Right-handed 310
Helix 25
25
B
15 24Right-handed alpha
Helix 26
26
B
27 43Right-handed alpha
Helix 27
27
B
53 58Right-handed alpha
Helix 28
28
B
80 82Right-handed 310
Helix 29
29
B
90 111Right-handed alpha
Helix 30
30
B
112 119Right-handed alpha
Helix 31
31
B
120 135Right-handed alpha
Helix 32
32
B
156 173Right-handed alpha
Helix 33
33
B
183 186Right-handed 310
Helix 34
34
B
187 200Right-handed alpha
Helix 35
35
B
233 245Right-handed alpha
Helix 36
36
B
254 269Right-handed alpha
Helix 37
37
B
270 274Right-handed 310
Helix 38
38
B
285 287Right-handed 310
Helix 39
39
B
288 303Right-handed alpha
Helix 40
40
B
304 309Right-handed alpha
Helix 41
41
B
317 339Right-handed alpha
Helix 42
42
B
352 357Right-handed alpha
Helix 43
43
B
362 368Right-handed alpha
Helix 44
44
B
376 397Right-handed alpha
Helix 45
45
B
397 408Right-handed alpha
Helix 46
46
B
415 432Right-handed alpha
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There are 8 sheets in PDB entry 3BQ9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
71 77anti-parallel
Strand 3
A
62 68anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
88 89anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
207 211parallel
Strand 3
A
176 179parallel
Strand 4
A
146 150parallel
Strand 5
A
247 250parallel
Strand 6
A
280 284parallel
Strand 7
A
312 315parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 413first strand
Strand 2
A
446 449parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
71 77anti-parallel
Strand 3
B
62 68anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
88 89anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 230first strand
Strand 2
B
207 211parallel
Strand 3
B
176 179parallel
Strand 4
B
146 150parallel
Strand 5
B
247 250parallel
Strand 6
B
280 284parallel
Strand 7
B
312 315parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 412first strand
Strand 2
B
446 448parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il