Analysis of interatomic Contacts of Structural Units in PDB entry:
3BQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BQW entry

There is 1 chain in PDB entry 3BQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ALA 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3BQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 18Right-handed alpha
Helix 2
2
A
22 27Right-handed alpha
Helix 3
3
A
29 36Right-handed alpha
Helix 4
4
A
50 52Right-handed 310
Helix 5
5
A
73 76Right-handed 310
Helix 6
6
A
106 111Right-handed 310
Helix 7
7
A
112 147Right-handed alpha
Helix 8
8
A
166 168Right-handed 310
Helix 9
9
A
174 176Right-handed 310
Helix 10
10
A
178 182Right-handed 310
Helix 11
11
A
189 199Right-handed alpha
Helix 12
12
A
210 219Right-handed alpha
Helix 13
13
A
220 227Right-handed alpha
Helix 14
14
A
235 242Right-handed alpha
Helix 15
15
A
300 306Right-handed alpha
Helix 16
16
A
341 345Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 3BQW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
292 295parallel
Strand 3
A
335 338anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
61 67anti-parallel
Strand 3
A
77 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
61 67anti-parallel
Strand 3
A
159 162anti-parallel
Strand 4
A
148 151anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
327 332anti-parallel
Strand 3
A
314 319anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
346 349parallel
Strand 3
A
281 285anti-parallel
Strand 4
A
206 209anti-parallel
Strand 5
A
257 262parallel
Strand 6
A
248 254anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
273 275anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il