Analysis of interatomic Contacts of Structural Units in PDB entry:
3BRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BRD entry

There are 4 chains in PDB entry 3BRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 T 1 A 15
C
 A 1 T 15
A
 VAL 195LEU 661
D
 ARG 937ASN 951
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3BRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
199 209Right-handed alpha
Helix 2
2
A
209 214Right-handed alpha
Helix 3
3
A
247 259Right-handed alpha
Helix 4
4
A
380 385Right-handed alpha
Helix 5
5
A
401 405Right-handed 310
Helix 6
6
A
484 488Right-handed 310
Helix 7
7
A
531 535Right-handed 310
Helix 8
8
A
573 576Right-handed 310
Helix 9
9
A
615 620Right-handed alpha
Helix 10
10
A
624 629Right-handed alpha
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There are 7 sheets in PDB entry 3BRD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 524first strand
Strand 2
A
527 529anti-parallel
Strand 3
A
478 480anti-parallel
Strand 4
A
469 475anti-parallel
Strand 5
A
454 459anti-parallel
Strand 6
A
425 430anti-parallel
Strand 7
A
391 396anti-parallel
Strand 8
A
406 411anti-parallel
Strand 9
A
414 418anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
938 941first strand
Strand 2
A
441 445anti-parallel
Strand 3
A
425 430anti-parallel
Strand 4
A
391 396anti-parallel
Strand 5
A
536 550anti-parallel
Strand 6
A
648 657anti-parallel
Strand 7
A
637 644anti-parallel
Strand 8
A
590 594anti-parallel
Strand 9
A
597 599anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 326first strand
Strand 2
A
241 245anti-parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
536 550anti-parallel
Strand 5
A
494 500anti-parallel
Strand 6
A
469 475anti-parallel
Strand 7
A
478 480anti-parallel
Strand 8
A
527 529anti-parallel
Strand 9
A
521 524anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
363 366parallel
Strand 3
A
340 341anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
286 291anti-parallel
Strand 3
A
344 349anti-parallel
Strand 4
A
354 359anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 511first strand
Strand 2
A
514 519anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 571first strand
Strand 2
A
578 584anti-parallel
Strand 3
A
608 612anti-parallel
Strand 4
A
601 605anti-parallel
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