Analysis of interatomic Contacts of Structural Units in PDB entry:
3BRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BRY entry

There are 2 chains in PDB entry 3BRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3HIS 436
B
 VAL 3HIS 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3BRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 16Right-handed alpha
Helix 2
2
A
26 32Right-handed 310
Helix 3
3
A
33 37Right-handed 310
Helix 4
4
A
304 307Right-handed 310
Helix 5
5
B
9 16Right-handed alpha
Helix 6
6
B
26 32Right-handed 310
Helix 7
7
B
33 37Right-handed 310
Helix 8
8
B
304 307Right-handed 310
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There are 6 sheets in PDB entry 3BRY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
130 145anti-parallel
Strand 3
A
94 103anti-parallel
Strand 4
A
80 91anti-parallel
Strand 5
A
43 59anti-parallel
Strand 6
A
420 435anti-parallel
Strand 7
A
392 401anti-parallel
Strand 8
A
378 387anti-parallel
Strand 9
A
350 360anti-parallel
Strand 10
A
335 347anti-parallel
Strand 11
A
293 302anti-parallel
Strand 12
A
280 288anti-parallel
Strand 13
A
233 240anti-parallel
Strand 14
A
214 230anti-parallel
Strand 15
A
150 169anti-parallel
Strand 16
A
200 203anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
130 145anti-parallel
Strand 3
A
150 169anti-parallel
Strand 4
A
200 203anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
268 273anti-parallel
Strand 3
A
310 315anti-parallel
Strand 4
A
327 329anti-parallel
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There are 16 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
130 145anti-parallel
Strand 3
B
94 103anti-parallel
Strand 4
B
80 91anti-parallel
Strand 5
B
43 59anti-parallel
Strand 6
B
420 435anti-parallel
Strand 7
B
392 401anti-parallel
Strand 8
B
378 387anti-parallel
Strand 9
B
350 360anti-parallel
Strand 10
B
335 347anti-parallel
Strand 11
B
293 302anti-parallel
Strand 12
B
280 288anti-parallel
Strand 13
B
233 240anti-parallel
Strand 14
B
214 230anti-parallel
Strand 15
B
150 169anti-parallel
Strand 16
B
200 203anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
130 145anti-parallel
Strand 3
B
150 169anti-parallel
Strand 4
B
200 203anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 252first strand
Strand 2
B
268 273anti-parallel
Strand 3
B
310 315anti-parallel
Strand 4
B
327 329anti-parallel
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