Analysis of interatomic Contacts of Structural Units in PDB entry:
3BS6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BS6 entry

There are 2 chains in PDB entry 3BS6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 59ASP 329
B
 GLY 56HIS 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 3BS6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
122 126Right-handed 310
Helix 2
2
A
234 240Right-handed alpha
Helix 3
3
A
313 321Right-handed alpha
Helix 4
4
A
323 328Right-handed 310
Helix 5
5
B
122 126Right-handed 310
Helix 6
6
B
234 240Right-handed alpha
Helix 7
7
B
313 321Right-handed alpha
Helix 8
8
B
323 328Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 3BS6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
60 64parallel
Strand 3
A
69 73anti-parallel
Strand 4
A
78 88anti-parallel
Strand 5
A
96 103anti-parallel
Strand 6
A
106 115anti-parallel
Strand 7
A
188 199anti-parallel
Strand 8
A
293 295anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
60 64parallel
Strand 3
A
69 73anti-parallel
Strand 4
A
78 88anti-parallel
Strand 5
A
106 115anti-parallel
Strand 6
A
188 199anti-parallel
Strand 7
A
283 289anti-parallel
Strand 8
A
271 280anti-parallel
Strand 9
A
245 249anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 154first strand
Strand 2
A
160 168anti-parallel
Strand 3
A
173 181anti-parallel
Strand 4
A
300 310anti-parallel
Strand 5
A
260 267anti-parallel
Strand 6
A
252 257anti-parallel
Strand 7
A
220 224anti-parallel
Strand 8
A
231 233anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
78 88anti-parallel
Strand 3
B
69 73anti-parallel
Strand 4
B
60 64anti-parallel
Strand 5
B
137 139parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
B
106 115anti-parallel
Strand 3
B
188 199anti-parallel
Strand 4
B
283 289anti-parallel
Strand 5
B
271 280anti-parallel
Strand 6
B
245 249anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
B
106 115anti-parallel
Strand 3
B
188 199anti-parallel
Strand 4
B
293 295anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 154first strand
Strand 2
B
160 168anti-parallel
Strand 3
B
173 181anti-parallel
Strand 4
B
300 311anti-parallel
Strand 5
B
260 267anti-parallel
Strand 6
B
252 257anti-parallel
Strand 7
B
220 224anti-parallel
Strand 8
B
231 233anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il