Analysis of interatomic Contacts of Structural Units in PDB entry:
3BSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BSD entry

There is 1 chain in PDB entry 3BSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 8GLN 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3BSD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
127 134Right-handed alpha
Helix 2
2
A
157 170Right-handed alpha
Helix 3
3
A
175 185Right-handed alpha
Helix 4
4
A
188 196Right-handed alpha
Helix 5
5
A
233 238Right-handed alpha
Helix 6
6
A
244 248Right-handed 310
Helix 7
7
A
291 300Right-handed alpha
Helix 8
8
A
342 355Right-handed alpha
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There are 3 sheets in PDB entry 3BSD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
218 229anti-parallel
Strand 3
A
204 209anti-parallel
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There are 15 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
218 229anti-parallel
Strand 3
A
142 153anti-parallel
Strand 4
A
109 123anti-parallel
Strand 5
A
95 106anti-parallel
Strand 6
A
78 90anti-parallel
Strand 7
A
64 75anti-parallel
Strand 8
A
47 59anti-parallel
Strand 9
A
252 261anti-parallel
Strand 10
A
264 273anti-parallel
Strand 11
A
28 36anti-parallel
Strand 12
A
11 20anti-parallel
Strand 13
A
308 316parallel
Strand 14
A
337 341anti-parallel
Strand 15
A
332 334anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
285 287anti-parallel
Strand 3
A
362 365anti-parallel
Strand 4
A
322 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il