Analysis of interatomic Contacts of Structural Units in PDB entry:
3BUE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BUE entry

There are 6 chains in PDB entry 3BUE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 93ARG 170
B
 GLY 93ARG 170
C
 GLY 93ARG 170
D
 GLY 92ARG 170
E
 GLY 93ARG 170
F
 GLY 93ARG 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3BUE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 105Right-handed alpha
Helix 2
2
A
123 135Right-handed alpha
Helix 3
3
A
158 168Right-handed alpha
Helix 4
4
B
93 105Right-handed alpha
Helix 5
5
B
123 135Right-handed alpha
Helix 6
6
B
158 168Right-handed alpha
Helix 7
7
C
93 105Right-handed alpha
Helix 8
8
C
123 135Right-handed alpha
Helix 9
9
C
158 168Right-handed alpha
Helix 10
10
D
92 105Right-handed alpha
Helix 11
11
D
123 135Right-handed alpha
Helix 12
12
D
158 168Right-handed alpha
Helix 13
13
E
93 105Right-handed alpha
Helix 14
14
E
123 135Right-handed alpha
Helix 15
15
E
158 170Right-handed alpha
Helix 16
16
F
93 105Right-handed alpha
Helix 17
17
F
123 135Right-handed alpha
Helix 18
18
F
158 168Right-handed alpha
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There are 6 sheets in PDB entry 3BUE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
114 118anti-parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
139 144anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
114 118anti-parallel
Strand 3
B
148 153anti-parallel
Strand 4
B
139 144anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 111first strand
Strand 2
C
114 118anti-parallel
Strand 3
C
148 153anti-parallel
Strand 4
C
139 144anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 111first strand
Strand 2
D
114 118anti-parallel
Strand 3
D
148 153anti-parallel
Strand 4
D
139 144anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
107 111first strand
Strand 2
E
114 118anti-parallel
Strand 3
E
148 153anti-parallel
Strand 4
E
139 144anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
107 111first strand
Strand 2
F
114 118anti-parallel
Strand 3
F
148 153anti-parallel
Strand 4
F
139 144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il