Analysis of interatomic Contacts of Structural Units in PDB entry:
3BUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BUJ entry

There is 1 chain in PDB entry 3BUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1GLY 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3BUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 14Right-handed alpha
Helix 2
2
A
15 26Right-handed alpha
Helix 3
3
A
32 34Right-handed 310
Helix 4
4
A
40 49Right-handed alpha
Helix 5
5
A
55 67Right-handed alpha
Helix 6
6
A
69 76Right-handed alpha
Helix 7
7
A
77 82Right-handed 310
Helix 8
8
A
85 95Right-handed alpha
Helix 9
9
A
96 98Right-handed 310
Helix 10
10
A
103 105Right-handed 310
Helix 11
11
A
106 119Right-handed alpha
Helix 12
12
A
120 122Right-handed 310
Helix 13
13
A
129 133Right-handed alpha
Helix 14
14
A
133 147Right-handed alpha
Helix 15
15
A
149 151Right-handed 310
Helix 16
16
A
152 165Right-handed alpha
Helix 17
17
A
166 168Right-handed 310
Helix 18
18
A
172 201Right-handed alpha
Helix 19
19
A
204 215Right-handed alpha
Helix 20
20
A
219 252Right-handed alpha
Helix 21
21
A
252 262Right-handed alpha
Helix 22
22
A
265 277Right-handed alpha
Helix 23
23
A
308 312Right-handed alpha
Helix 24
24
A
338 342Right-handed 310
Helix 25
25
A
345 362Right-handed alpha
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There are 3 sheets in PDB entry 3BUJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
36 38anti-parallel
Strand 3
A
303 307parallel
Strand 4
A
282 287anti-parallel
Strand 5
A
53 54anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
390 392anti-parallel
Strand 3
A
367 368anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
296 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il