Analysis of interatomic Contacts of Structural Units in PDB entry:
3BVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BVQ entry

There are 2 chains in PDB entry 3BVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12PRO 364
B
 ALA 12THR 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 3BVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 40Right-handed alpha
Helix 2
2
A
42 49Right-handed alpha
Helix 3
3
A
58 62Right-handed 310
Helix 4
4
A
81 86Right-handed 310
Helix 5
5
A
87 99Right-handed alpha
Helix 6
6
A
111 116Right-handed 310
Helix 7
7
A
117 130Right-handed alpha
Helix 8
8
A
192 204Right-handed alpha
Helix 9
9
A
215 224Right-handed alpha
Helix 10
10
A
238 248Right-handed alpha
Helix 11
11
A
263 273Right-handed alpha
Helix 12
12
A
325 335Right-handed alpha
Helix 13
13
A
336 342Right-handed alpha
Helix 14
14
A
350 361Right-handed alpha
Helix 15
15
B
30 40Right-handed alpha
Helix 16
16
B
42 49Right-handed alpha
Helix 17
17
B
81 86Right-handed 310
Helix 18
18
B
87 100Right-handed alpha
Helix 19
19
B
113 116Right-handed 310
Helix 20
20
B
117 131Right-handed alpha
Helix 21
21
B
192 205Right-handed alpha
Helix 22
22
B
216 223Right-handed alpha
Helix 23
23
B
230 234Right-handed 310
Helix 24
24
B
238 248Right-handed alpha
Helix 25
25
B
263 273Right-handed alpha
Helix 26
26
B
325 335Right-handed alpha
Helix 27
27
B
335 342Right-handed alpha
Helix 28
28
B
346 360Right-handed alpha
Helix 29
29
B
361 363Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 3BVQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
66 69anti-parallel
Strand 3
A
76 79anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
133 139parallel
Strand 3
A
161 168anti-parallel
Strand 4
A
174 183anti-parallel
Strand 5
A
254 262parallel
Strand 6
A
298 304parallel
Strand 7
A
317 324anti-parallel
Strand 8
A
286 288parallel
Strand 9
A
279 280anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
157 158anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
13 18anti-parallel
Strand 3
B
64 69anti-parallel
Strand 4
B
76 79anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
133 138parallel
Strand 3
B
161 168anti-parallel
Strand 4
B
174 183anti-parallel
Strand 5
B
254 262parallel
Strand 6
B
298 304parallel
Strand 7
B
317 323anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
B
157 159anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il