Analysis of interatomic Contacts of Structural Units in PDB entry:
3BW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BW8 entry

There are 2 chains in PDB entry 3BW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1ARG 205
B
 PRO 1ARG 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3BW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 27Right-handed alpha
Helix 2
2
A
29 42Right-handed alpha
Helix 3
3
A
42 53Right-handed alpha
Helix 4
4
A
56 60Right-handed 310
Helix 5
5
A
61 76Right-handed alpha
Helix 6
6
A
91 95Right-handed 310
Helix 7
7
A
96 101Right-handed alpha
Helix 8
8
A
111 123Right-handed alpha
Helix 9
9
A
140 144Right-handed 310
Helix 10
10
A
164 167Right-handed 310
Helix 11
11
B
11 27Right-handed alpha
Helix 12
12
B
29 42Right-handed alpha
Helix 13
13
B
42 53Right-handed alpha
Helix 14
14
B
56 60Right-handed 310
Helix 15
15
B
61 75Right-handed alpha
Helix 16
16
B
91 95Right-handed 310
Helix 17
17
B
96 101Right-handed alpha
Helix 18
18
B
111 123Right-handed alpha
Helix 19
19
B
140 144Right-handed 310
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There are 4 sheets in PDB entry 3BW8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 90first strand
Strand 2
A
148 154anti-parallel
Strand 3
A
197 203parallel
Strand 4
A
181 190anti-parallel
Strand 5
A
126 129anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
174 177anti-parallel
Strand 3
A
161 162anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 90first strand
Strand 2
B
148 154anti-parallel
Strand 3
B
197 203parallel
Strand 4
B
181 190anti-parallel
Strand 5
B
126 129anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
174 177anti-parallel
Strand 3
B
161 162anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il