Analysis of interatomic Contacts of Structural Units in PDB entry:
3BWK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BWK entry

There are 4 chains in PDB entry 3BWK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 8LEU 249
B
 TYR 8LEU 249
C
 TYR 8LEU 249
D
 TYR 8LEU 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 3BWK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 20Right-handed alpha
Helix 2
2
A
34 36Right-handed 310
Helix 3
3
A
50 69Right-handed alpha
Helix 4
4
A
75 83Right-handed alpha
Helix 5
5
A
87 91Right-handed 310
Helix 6
6
A
93 104Right-handed alpha
Helix 7
7
A
124 128Right-handed 310
Helix 8
8
A
144 152Right-handed alpha
Helix 9
9
A
162 167Right-handed alpha
Helix 10
10
B
11 20Right-handed alpha
Helix 11
11
B
34 36Right-handed 310
Helix 12
12
B
50 69Right-handed alpha
Helix 13
13
B
75 83Right-handed alpha
Helix 14
14
B
87 91Right-handed 310
Helix 15
15
B
93 104Right-handed alpha
Helix 16
16
B
124 128Right-handed 310
Helix 17
17
B
144 152Right-handed alpha
Helix 18
18
B
162 167Right-handed alpha
Helix 19
19
C
11 20Right-handed alpha
Helix 20
20
C
50 69Right-handed alpha
Helix 21
21
C
75 83Right-handed alpha
Helix 22
22
C
87 91Right-handed 310
Helix 23
23
C
93 104Right-handed alpha
Helix 24
24
C
124 128Right-handed 310
Helix 25
25
C
144 152Right-handed alpha
Helix 26
26
C
162 167Right-handed alpha
Helix 27
27
D
11 20Right-handed alpha
Helix 28
28
D
50 69Right-handed alpha
Helix 29
29
D
75 83Right-handed alpha
Helix 30
30
D
87 91Right-handed 310
Helix 31
31
D
93 104Right-handed alpha
Helix 32
32
D
124 128Right-handed 310
Helix 33
33
D
144 152Right-handed alpha
Helix 34
34
D
162 167Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3BWK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
136 139parallel
Strand 3
A
244 248anti-parallel
Strand 4
A
155 159anti-parallel
Strand 5
A
183 196anti-parallel
Strand 6
A
31 32anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
136 139parallel
Strand 3
A
244 248anti-parallel
Strand 4
A
155 159anti-parallel
Strand 5
A
183 196anti-parallel
Strand 6
A
203 212anti-parallel
Strand 7
A
224 229anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
136 139parallel
Strand 3
B
244 248anti-parallel
Strand 4
B
155 159anti-parallel
Strand 5
B
183 197anti-parallel
Strand 6
B
31 32anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
136 139parallel
Strand 3
B
244 248anti-parallel
Strand 4
B
155 159anti-parallel
Strand 5
B
183 197anti-parallel
Strand 6
B
202 212anti-parallel
Strand 7
B
224 229anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 10first strand
Strand 2
C
136 139parallel
Strand 3
C
244 248anti-parallel
Strand 4
C
155 159anti-parallel
Strand 5
C
183 193anti-parallel
Strand 6
C
31 32anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 10first strand
Strand 2
C
136 139parallel
Strand 3
C
244 248anti-parallel
Strand 4
C
155 159anti-parallel
Strand 5
C
183 193anti-parallel
Strand 6
C
206 212anti-parallel
Strand 7
C
224 229anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 10first strand
Strand 2
D
136 139parallel
Strand 3
D
244 248anti-parallel
Strand 4
D
155 159anti-parallel
Strand 5
D
183 192anti-parallel
Strand 6
D
31 32anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 10first strand
Strand 2
D
136 139parallel
Strand 3
D
244 248anti-parallel
Strand 4
D
155 159anti-parallel
Strand 5
D
183 192anti-parallel
Strand 6
D
207 212anti-parallel
Strand 7
D
224 229anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il