Analysis of interatomic Contacts of Structural Units in PDB entry:
3BWU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BWU entry

There are 3 chains in PDB entry 3BWU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLY 1GLU 205
D
 LEU 2ASN 122
F
 ASP 13GLN 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 3BWU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
123 131Right-handed 310
Helix 2
2
D
5 10Right-handed 310
Helix 3
3
D
14 24Right-handed alpha
Helix 4
4
D
65 72Right-handed alpha
Helix 5
5
D
75 79Right-handed 310
Helix 6
6
D
81 85Right-handed 310
Helix 7
7
D
92 97Right-handed alpha
Helix 8
8
D
116 120Right-handed 310
Helix 9
9
F
108 112Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 3BWU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
17 24anti-parallel
Strand 3
C
61 69anti-parallel
Strand 4
C
48 51anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 12first strand
Strand 2
C
102 116parallel
Strand 3
F
23 24anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 58first strand
Strand 2
C
30 39anti-parallel
Strand 3
C
81 91anti-parallel
Strand 4
C
102 116anti-parallel
Strand 5
F
144 153parallel
Strand 6
F
62 68anti-parallel
Strand 7
F
114 116anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 135first strand
Strand 2
C
139 144anti-parallel
Strand 3
C
171 176anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 161first strand
Strand 2
C
150 157anti-parallel
Strand 3
C
165 167anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 161first strand
Strand 2
C
150 157anti-parallel
Strand 3
C
185 190anti-parallel
Strand 4
C
200 201anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 62first strand
Strand 2
D
42 53anti-parallel
Strand 3
D
31 39anti-parallel
Strand 4
D
110 114parallel
Strand 5
D
101 105anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
16 20first strand
Strand 2
F
47 56anti-parallel
Strand 3
F
123 133anti-parallel
Strand 4
F
91 96anti-parallel
Strand 5
F
79 80anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il