Analysis of interatomic Contacts of Structural Units in PDB entry:
3BYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BYV entry

There is 1 chain in PDB entry 3BYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 208TYR 568
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3BYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
211 222Right-handed alpha
Helix 2
2
A
223 226Right-handed 310
Helix 3
3
A
234 246Right-handed alpha
Helix 4
4
A
306 317Right-handed alpha
Helix 5
5
A
318 321Right-handed 310
Helix 6
6
A
326 335Right-handed alpha
Helix 7
7
A
377 387Right-handed alpha
Helix 8
8
A
391 416Right-handed alpha
Helix 9
9
A
424 426Right-handed 310
Helix 10
10
A
440 444Right-handed 310
Helix 11
11
A
461 469Right-handed alpha
Helix 12
12
A
471 476Right-handed alpha
Helix 13
13
A
482 500Right-handed alpha
Helix 14
14
A
513 518Right-handed 310
Helix 15
15
A
524 535Right-handed alpha
Helix 16
16
A
538 542Right-handed 310
Helix 17
17
A
544 550Right-handed alpha
Helix 18
18
A
551 565Right-handed alpha
Helix 19
19
A
566 568Right-handed 310
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There are 4 sheets in PDB entry 3BYV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
362 364anti-parallel
Strand 3
A
291 299anti-parallel
Strand 4
A
366 371anti-parallel
Strand 5
A
341 344anti-parallel
Strand 6
A
252 257anti-parallel
Strand 7
A
264 275anti-parallel
Strand 8
A
278 284anti-parallel
Strand 9
A
291 299anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
428 430anti-parallel
Strand 3
A
436 438anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
445 446anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 452first strand
Strand 2
A
478 480anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il