Analysis of interatomic Contacts of Structural Units in PDB entry:
3C01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C01 entry

There are 8 chains in PDB entry 3C01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 239ASN 258
E
 PRO 259VAL 346
B
 GLU 239ASN 258
F
 PRO 259ASP 345
C
 ILE 240ASN 258
G
 PRO 259ASP 345
D
 ILE 240ASN 258
H
 PRO 259ASP 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3C01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
242 251Right-handed alpha
Helix 2
2
E
284 298Right-handed alpha
Helix 3
3
E
304 315Right-handed alpha
Helix 4
4
E
322 343Right-handed alpha
Helix 5
5
B
242 251Right-handed alpha
Helix 6
6
F
284 298Right-handed alpha
Helix 7
7
F
304 315Right-handed alpha
Helix 8
8
F
322 343Right-handed alpha
Helix 9
9
C
242 251Right-handed alpha
Helix 10
10
G
284 298Right-handed alpha
Helix 11
11
G
304 315Right-handed alpha
Helix 12
12
G
325 344Right-handed alpha
Helix 13
13
D
242 251Right-handed alpha
Helix 14
14
H
284 298Right-handed alpha
Helix 15
15
H
304 315Right-handed alpha
Helix 16
16
H
325 344Right-handed alpha
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There are 4 sheets in PDB entry 3C01. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
277 283first strand
Strand 2
E
262 267anti-parallel
Strand 3
A
254 257anti-parallel
Strand 4
E
301 303parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
273 283first strand
Strand 2
F
262 269anti-parallel
Strand 3
B
254 257anti-parallel
Strand 4
F
301 303parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
277 283first strand
Strand 2
G
262 267anti-parallel
Strand 3
C
254 257anti-parallel
Strand 4
G
301 303parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
277 283first strand
Strand 2
H
262 267anti-parallel
Strand 3
D
254 257anti-parallel
Strand 4
H
301 303parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il