Analysis of interatomic Contacts of Structural Units in PDB entry:
3C0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C0D entry

There are 8 chains in PDB entry 3C0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4LEU 112
B
 LEU 4LYS 110
C
 LEU 4ALA 109
D
 LEU 4ALA 109
E
 LEU 4ALA 109
F
 LEU 4ALA 109
G
 LEU 4ALA 109
H
 LEU 4ALA 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3C0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 15Right-handed 310
Helix 2
2
A
55 58Right-handed 310
Helix 3
3
B
13 15Right-handed 310
Helix 4
4
B
54 58Right-handed 310
Helix 5
5
C
13 15Right-handed 310
Helix 6
6
C
54 58Right-handed 310
Helix 7
7
D
13 15Right-handed 310
Helix 8
8
D
54 58Right-handed 310
Helix 9
9
E
13 15Right-handed 310
Helix 10
10
E
54 58Right-handed 310
Helix 11
11
F
13 15Right-handed 310
Helix 12
12
F
36 38Right-handed 310
Helix 13
13
F
54 58Right-handed 310
Helix 14
14
G
54 58Right-handed 310
Helix 15
15
H
13 15Right-handed 310
Helix 16
16
H
54 58Right-handed 310
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There are 26 sheets in PDB entry 3C0D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
104 108anti-parallel
Strand 3
A
98 100anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
28 35anti-parallel
Strand 3
A
39 44anti-parallel
Strand 4
A
95 96anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
52 53anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
67 70anti-parallel
Strand 3
A
77 79anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
104 108anti-parallel
Strand 3
B
98 100anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 25first strand
Strand 2
B
28 35anti-parallel
Strand 3
B
39 44anti-parallel
Strand 4
B
95 96anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
66 70anti-parallel
Strand 3
B
77 79anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 11first strand
Strand 2
C
104 109anti-parallel
Strand 3
C
98 100anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 24first strand
Strand 2
C
29 35anti-parallel
Strand 3
C
39 44anti-parallel
Strand 4
C
95 96anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
67 70anti-parallel
Strand 3
C
77 79anti-parallel
Strand 4
C
85 86anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 11first strand
Strand 2
D
104 108anti-parallel
Strand 3
D
98 100anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 25first strand
Strand 2
D
28 35anti-parallel
Strand 3
D
39 44anti-parallel
Strand 4
D
95 96anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 63first strand
Strand 2
D
66 70anti-parallel
Strand 3
D
77 79anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 11first strand
Strand 2
E
104 108anti-parallel
Strand 3
E
98 101anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 25first strand
Strand 2
E
28 35anti-parallel
Strand 3
E
39 44anti-parallel
Strand 4
E
95 96anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
60 62first strand
Strand 2
E
67 70anti-parallel
Strand 3
E
77 79anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 11first strand
Strand 2
F
104 109anti-parallel
Strand 3
F
98 100anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
21 25first strand
Strand 2
F
28 35anti-parallel
Strand 3
F
39 44anti-parallel
Strand 4
F
95 96anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
60 63first strand
Strand 2
F
66 70anti-parallel
Strand 3
F
77 79anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
84 85first strand
Strand 2
F
88 92anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 11first strand
Strand 2
G
104 108anti-parallel
Strand 3
G
98 100anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
21 25first strand
Strand 2
G
28 34anti-parallel
Strand 3
G
40 44anti-parallel
Strand 4
G
95 96anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
59 62first strand
Strand 2
G
67 70anti-parallel
Strand 3
G
77 79anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
8 11first strand
Strand 2
H
104 106anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
21 24first strand
Strand 2
H
29 35anti-parallel
Strand 3
H
39 44anti-parallel
Strand 4
H
95 96anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
59 62first strand
Strand 2
H
67 70anti-parallel
Strand 3
H
78 79anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il