Analysis of interatomic Contacts of Structural Units in PDB entry:
3C16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C16 entry

There are 3 chains in PDB entry 3C16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 376LEU 565
B
 HIS 879THR 1077
C
 ALA 36LEU 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3C16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
400 407Right-handed alpha
Helix 2
2
A
408 430Right-handed alpha
Helix 3
3
A
454 476Right-handed alpha
Helix 4
4
A
508 520Right-handed alpha
Helix 5
5
A
529 534Right-handed alpha
Helix 6
6
A
546 550Right-handed 310
Helix 7
7
A
551 556Right-handed alpha
Helix 8
8
B
892 899Right-handed alpha
Helix 9
9
B
908 924Right-handed alpha
Helix 10
10
B
966 991Right-handed alpha
Helix 11
11
B
1021 1033Right-handed alpha
Helix 12
12
B
1043 1052Right-handed alpha
Helix 13
13
C
49 62Right-handed alpha
Helix 14
14
C
66 91Right-handed alpha
Helix 15
15
C
99 101Right-handed 310
Helix 16
16
C
102 112Right-handed alpha
Helix 17
17
C
121 134Right-handed alpha
Helix 18
18
C
134 142Right-handed alpha
Helix 19
19
C
143 147Right-handed 310
Helix 20
20
C
152 158Right-handed alpha
Helix 21
21
C
159 164Right-handed alpha
Helix 22
22
C
171 178Right-handed alpha
Helix 23
23
C
208 216Right-handed 310
Helix 24
24
C
229 233Right-handed 310
Helix 25
25
C
242 256Right-handed alpha
Helix 26
26
C
271 282Right-handed alpha
Helix 27
27
C
290 295Right-handed 310
Helix 28
28
C
309 325Right-handed alpha
Helix 29
29
C
325 330Right-handed alpha
Helix 30
30
C
346 364Right-handed alpha
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There are 6 sheets in PDB entry 3C16. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 438first strand
Strand 2
A
441 446anti-parallel
Strand 3
A
383 398anti-parallel
Strand 4
A
482 496anti-parallel
Strand 5
A
505 507anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 438first strand
Strand 2
A
441 446anti-parallel
Strand 3
A
383 398anti-parallel
Strand 4
A
482 496anti-parallel
Strand 5
A
526 528parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 544first strand
Strand 2
A
562 564anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
934 940first strand
Strand 2
B
943 948anti-parallel
Strand 3
B
885 891anti-parallel
Strand 4
B
997 1003anti-parallel
Strand 5
B
1039 1042parallel
Strand 6
B
1068 1075anti-parallel
Strand 7
B
1056 1064anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1006 1010first strand
Strand 2
B
1016 1020anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 192first strand
Strand 2
C
195 201anti-parallel
Strand 3
C
37 44parallel
Strand 4
C
221 227parallel
Strand 5
C
265 270parallel
Strand 6
C
340 341parallel
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