Analysis of interatomic Contacts of Structural Units in PDB entry:
3C1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C1M entry

There are 4 chains in PDB entry 3C1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 470
B
 THR 2LYS 470
C
 THR 2LYS 470
D
 THR 2LYS 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 3C1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 30Right-handed alpha
Helix 2
2
A
44 59Right-handed alpha
Helix 3
3
A
61 84Right-handed alpha
Helix 4
4
A
86 115Right-handed alpha
Helix 5
5
A
118 144Right-handed alpha
Helix 6
6
A
152 157Right-handed alpha
Helix 7
7
A
173 184Right-handed alpha
Helix 8
8
A
209 221Right-handed alpha
Helix 9
9
A
254 263Right-handed alpha
Helix 10
10
A
269 271Right-handed 310
Helix 11
11
A
272 280Right-handed alpha
Helix 12
12
A
330 345Right-handed alpha
Helix 13
13
A
369 382Right-handed alpha
Helix 14
14
A
419 432Right-handed alpha
Helix 15
15
A
455 468Right-handed alpha
Helix 16
16
B
14 30Right-handed alpha
Helix 17
17
B
44 59Right-handed alpha
Helix 18
18
B
61 84Right-handed alpha
Helix 19
19
B
86 115Right-handed alpha
Helix 20
20
B
118 144Right-handed alpha
Helix 21
21
B
173 184Right-handed alpha
Helix 22
22
B
209 222Right-handed alpha
Helix 23
23
B
254 263Right-handed alpha
Helix 24
24
B
269 271Right-handed 310
Helix 25
25
B
272 279Right-handed alpha
Helix 26
26
B
330 345Right-handed alpha
Helix 27
27
B
369 382Right-handed alpha
Helix 28
28
B
419 431Right-handed alpha
Helix 29
29
B
455 468Right-handed alpha
Helix 30
30
C
14 29Right-handed alpha
Helix 31
31
C
44 59Right-handed alpha
Helix 32
32
C
61 84Right-handed alpha
Helix 33
33
C
86 115Right-handed alpha
Helix 34
34
C
118 144Right-handed alpha
Helix 35
35
C
173 183Right-handed alpha
Helix 36
36
C
209 222Right-handed alpha
Helix 37
37
C
254 263Right-handed alpha
Helix 38
38
C
269 271Right-handed 310
Helix 39
39
C
272 280Right-handed alpha
Helix 40
40
C
330 345Right-handed alpha
Helix 41
41
C
369 382Right-handed alpha
Helix 42
42
C
419 431Right-handed alpha
Helix 43
43
C
455 468Right-handed alpha
Helix 44
44
D
14 32Right-handed alpha
Helix 45
45
D
44 59Right-handed alpha
Helix 46
46
D
61 84Right-handed alpha
Helix 47
47
D
86 115Right-handed alpha
Helix 48
48
D
118 127Right-handed alpha
Helix 49
49
D
127 144Right-handed alpha
Helix 50
50
D
173 184Right-handed alpha
Helix 51
51
D
209 222Right-handed alpha
Helix 52
52
D
254 263Right-handed alpha
Helix 53
53
D
269 271Right-handed 310
Helix 54
54
D
272 280Right-handed alpha
Helix 55
55
D
330 345Right-handed alpha
Helix 56
56
D
369 382Right-handed alpha
Helix 57
57
D
419 431Right-handed alpha
Helix 58
58
D
455 468Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3C1M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
187 191parallel
Strand 3
A
35 39parallel
Strand 4
A
3 7parallel
Strand 5
A
225 230parallel
Strand 6
A
283 287parallel
Strand 7
A
296 299anti-parallel
Strand 8
A
251 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
158 160anti-parallel
Strand 3
A
194 197parallel
Strand 4
A
202 204anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 325first strand
Strand 2
A
361 366anti-parallel
Strand 3
A
349 354anti-parallel
Strand 4
B
349 354anti-parallel
Strand 5
B
361 366anti-parallel
Strand 6
B
311 325anti-parallel
Strand 7
B
395 410anti-parallel
Strand 8
B
446 452anti-parallel
Strand 9
B
437 440anti-parallel
Strand 10
A
437 440anti-parallel
Strand 11
A
446 452anti-parallel
Strand 12
A
395 410anti-parallel
Strand 13
A
311 325anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 151first strand
Strand 2
B
187 191parallel
Strand 3
B
35 39parallel
Strand 4
B
3 7parallel
Strand 5
B
225 230parallel
Strand 6
B
283 287parallel
Strand 7
B
296 299anti-parallel
Strand 8
B
251 253parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 160first strand
Strand 2
B
169 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
202 204anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 151first strand
Strand 2
C
187 191parallel
Strand 3
C
35 39parallel
Strand 4
C
3 7parallel
Strand 5
C
225 230parallel
Strand 6
C
283 287parallel
Strand 7
C
296 299anti-parallel
Strand 8
C
251 253parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 160first strand
Strand 2
C
169 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 196first strand
Strand 2
C
202 204anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
311 325first strand
Strand 2
C
361 366anti-parallel
Strand 3
C
349 354anti-parallel
Strand 4
D
349 354anti-parallel
Strand 5
D
361 366anti-parallel
Strand 6
D
311 325anti-parallel
Strand 7
D
395 410anti-parallel
Strand 8
D
446 452anti-parallel
Strand 9
D
437 440anti-parallel
Strand 10
C
437 440anti-parallel
Strand 11
C
446 452anti-parallel
Strand 12
C
395 410anti-parallel
Strand 13
C
311 325anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
148 151first strand
Strand 2
D
187 191parallel
Strand 3
D
35 39parallel
Strand 4
D
3 7parallel
Strand 5
D
225 230parallel
Strand 6
D
283 287parallel
Strand 7
D
296 299anti-parallel
Strand 8
D
251 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
169 172first strand
Strand 2
D
158 160anti-parallel
Strand 3
D
194 197parallel
Strand 4
D
202 204anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il