Analysis of interatomic Contacts of Structural Units in PDB entry:
3C4W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C4W entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 3C4W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 31PRO 533
B
 SER 5GLU 7
B
 VAL 9PRO 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 3C4W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 37Right-handed alpha
Helix 2
2
A
43 46Right-handed 310
Helix 3
3
A
47 54Right-handed alpha
Helix 4
4
A
57 63Right-handed alpha
Helix 5
5
A
65 78Right-handed alpha
Helix 6
6
A
79 81Right-handed 310
Helix 7
7
A
82 97Right-handed alpha
Helix 8
8
A
102 115Right-handed alpha
Helix 9
9
A
127 136Right-handed alpha
Helix 10
10
A
143 155Right-handed alpha
Helix 11
11
A
156 164Right-handed alpha
Helix 12
12
A
165 180Right-handed alpha
Helix 13
13
A
183 185Right-handed 310
Helix 14
14
A
220 226Right-handed alpha
Helix 15
15
A
228 242Right-handed alpha
Helix 16
16
A
272 279Right-handed alpha
Helix 17
17
A
287 308Right-handed alpha
Helix 18
18
A
316 318Right-handed 310
Helix 19
19
A
357 362Right-handed alpha
Helix 20
20
A
368 385Right-handed alpha
Helix 21
21
A
397 408Right-handed alpha
Helix 22
22
A
417 429Right-handed alpha
Helix 23
23
A
431 435Right-handed 310
Helix 24
24
A
445 453Right-handed 310
Helix 25
25
A
456 462Right-handed alpha
Helix 26
26
A
496 507Right-handed alpha
Helix 27
27
A
511 522Right-handed alpha
Helix 28
28
A
523 529Right-handed alpha
Helix 29
29
B
12 18Right-handed alpha
Helix 30
30
B
19 24Right-handed alpha
Helix 31
31
B
32 37Right-handed alpha
Helix 32
32
B
43 46Right-handed 310
Helix 33
33
B
47 54Right-handed alpha
Helix 34
34
B
57 63Right-handed alpha
Helix 35
35
B
65 78Right-handed alpha
Helix 36
36
B
79 81Right-handed 310
Helix 37
37
B
82 97Right-handed alpha
Helix 38
38
B
102 115Right-handed alpha
Helix 39
39
B
127 135Right-handed alpha
Helix 40
40
B
143 155Right-handed alpha
Helix 41
41
B
156 164Right-handed alpha
Helix 42
42
B
165 180Right-handed alpha
Helix 43
43
B
183 185Right-handed 310
Helix 44
44
B
220 226Right-handed alpha
Helix 45
45
B
228 242Right-handed alpha
Helix 46
46
B
272 279Right-handed alpha
Helix 47
47
B
287 308Right-handed alpha
Helix 48
48
B
316 318Right-handed 310
Helix 49
49
B
357 362Right-handed alpha
Helix 50
50
B
368 385Right-handed alpha
Helix 51
51
B
397 408Right-handed alpha
Helix 52
52
B
417 428Right-handed alpha
Helix 53
53
B
431 435Right-handed 310
Helix 54
54
B
445 453Right-handed 310
Helix 55
55
B
456 462Right-handed alpha
Helix 56
56
B
497 507Right-handed alpha
Helix 57
57
B
511 523Right-handed alpha
Helix 58
58
B
523 529Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3C4W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 195first strand
Strand 2
A
200 206anti-parallel
Strand 3
A
212 219anti-parallel
Strand 4
A
259 264anti-parallel
Strand 5
A
250 255anti-parallel
Strand 6
A
509 510anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
320 322anti-parallel
Strand 3
A
328 330anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
337 338anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 195first strand
Strand 2
B
200 206anti-parallel
Strand 3
B
212 219anti-parallel
Strand 4
B
259 264anti-parallel
Strand 5
B
250 255anti-parallel
Strand 6
B
509 510anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
320 322anti-parallel
Strand 3
B
328 330anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
337 338anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il