Analysis of interatomic Contacts of Structural Units in PDB entry:
3C5I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C5I entry

There are 5 chains in PDB entry 3C5I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 11ASP 369
B
 THR 12ASP 369
C
 ASP 10ASP 369
D
 LEU 11ASP 369
E
 ASN 3GLN 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 77 helices in PDB entry 3C5I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
26 29Right-handed 310
Helix 3
3
A
32 34Right-handed 310
Helix 4
4
A
55 60Right-handed alpha
Helix 5
5
A
77 81Right-handed 310
Helix 6
6
A
83 97Right-handed alpha
Helix 7
7
A
122 127Right-handed 310
Helix 8
8
A
128 144Right-handed alpha
Helix 9
9
A
144 149Right-handed alpha
Helix 10
10
A
159 173Right-handed alpha
Helix 11
11
A
177 181Right-handed 310
Helix 12
12
A
184 203Right-handed alpha
Helix 13
13
A
207 210Right-handed 310
Helix 14
14
A
220 222Right-handed 310
Helix 15
15
A
244 254Right-handed alpha
Helix 16
16
A
271 274Right-handed 310
Helix 17
17
A
276 292Right-handed alpha
Helix 18
18
A
300 333Right-handed alpha
Helix 19
19
A
340 362Right-handed alpha
Helix 20
20
B
13 25Right-handed alpha
Helix 21
21
B
26 29Right-handed 310
Helix 22
22
B
32 34Right-handed 310
Helix 23
23
B
55 60Right-handed alpha
Helix 24
24
B
77 81Right-handed 310
Helix 25
25
B
83 97Right-handed alpha
Helix 26
26
B
122 127Right-handed 310
Helix 27
27
B
128 144Right-handed alpha
Helix 28
28
B
144 149Right-handed alpha
Helix 29
29
B
159 172Right-handed alpha
Helix 30
30
B
173 175Right-handed 310
Helix 31
31
B
177 181Right-handed 310
Helix 32
32
B
184 203Right-handed alpha
Helix 33
33
B
207 210Right-handed 310
Helix 34
34
B
220 222Right-handed 310
Helix 35
35
B
244 254Right-handed alpha
Helix 36
36
B
271 274Right-handed 310
Helix 37
37
B
276 292Right-handed alpha
Helix 38
38
B
300 333Right-handed alpha
Helix 39
39
B
340 362Right-handed alpha
Helix 40
40
C
13 25Right-handed alpha
Helix 41
41
C
26 29Right-handed 310
Helix 42
42
C
32 34Right-handed 310
Helix 43
43
C
55 62Right-handed alpha
Helix 44
44
C
77 81Right-handed 310
Helix 45
45
C
83 97Right-handed alpha
Helix 46
46
C
122 127Right-handed 310
Helix 47
47
C
128 144Right-handed alpha
Helix 48
48
C
144 149Right-handed alpha
Helix 49
49
C
159 173Right-handed alpha
Helix 50
50
C
177 181Right-handed 310
Helix 51
51
C
184 203Right-handed alpha
Helix 52
52
C
207 210Right-handed 310
Helix 53
53
C
220 222Right-handed 310
Helix 54
54
C
244 255Right-handed alpha
Helix 55
55
C
271 274Right-handed 310
Helix 56
56
C
276 292Right-handed alpha
Helix 57
57
C
300 333Right-handed alpha
Helix 58
58
C
340 362Right-handed alpha
Helix 59
59
D
13 25Right-handed alpha
Helix 60
60
D
26 29Right-handed 310
Helix 61
61
D
32 34Right-handed 310
Helix 62
62
D
55 62Right-handed alpha
Helix 63
63
D
77 81Right-handed 310
Helix 64
64
D
83 97Right-handed alpha
Helix 65
65
D
122 127Right-handed 310
Helix 66
66
D
128 144Right-handed alpha
Helix 67
67
D
144 149Right-handed alpha
Helix 68
68
D
159 173Right-handed alpha
Helix 69
69
D
177 181Right-handed 310
Helix 70
70
D
184 203Right-handed alpha
Helix 71
71
D
207 210Right-handed 310
Helix 72
72
D
220 222Right-handed 310
Helix 73
73
D
244 255Right-handed alpha
Helix 74
74
D
271 274Right-handed 310
Helix 75
75
D
276 292Right-handed alpha
Helix 76
76
D
300 332Right-handed alpha
Helix 77
77
D
340 362Right-handed alpha
Back to top of page

There are 16 sheets in PDB entry 3C5I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
48 54anti-parallel
Strand 3
A
68 73anti-parallel
Strand 4
A
110 114anti-parallel
Strand 5
A
103 107anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
224 226anti-parallel
Strand 3
A
231 233anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 215first strand
Strand 2
A
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
268 269anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
48 54anti-parallel
Strand 3
B
68 73anti-parallel
Strand 4
B
110 114anti-parallel
Strand 5
B
103 107anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
224 226anti-parallel
Strand 3
B
231 233anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 215first strand
Strand 2
B
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 258first strand
Strand 2
B
268 269anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 40first strand
Strand 2
C
48 54anti-parallel
Strand 3
C
68 73anti-parallel
Strand 4
C
110 114anti-parallel
Strand 5
C
103 107anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 120first strand
Strand 2
C
224 226anti-parallel
Strand 3
C
231 233anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 215first strand
Strand 2
C
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 258first strand
Strand 2
C
268 269anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 41first strand
Strand 2
D
48 54anti-parallel
Strand 3
D
68 73anti-parallel
Strand 4
D
110 114anti-parallel
Strand 5
D
103 107anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 120first strand
Strand 2
D
224 226anti-parallel
Strand 3
D
231 233anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 215first strand
Strand 2
D
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
257 258first strand
Strand 2
D
268 269anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il