Analysis of interatomic Contacts of Structural Units in PDB entry:
3C5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C5U entry

There is 1 chain in PDB entry 3C5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4PRO 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3C5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 34Right-handed 310
Helix 2
2
A
61 78Right-handed alpha
Helix 3
3
A
113 117Right-handed alpha
Helix 4
4
A
123 142Right-handed alpha
Helix 5
5
A
190 196Right-handed 310
Helix 6
6
A
203 219Right-handed alpha
Helix 7
7
A
227 240Right-handed alpha
Helix 8
8
A
243 250Right-handed alpha
Helix 9
9
A
252 262Right-handed alpha
Helix 10
10
A
269 274Right-handed alpha
Helix 11
11
A
278 289Right-handed alpha
Helix 12
12
A
298 304Right-handed alpha
Helix 13
13
A
305 309Right-handed 310
Helix 14
14
A
313 317Right-handed 310
Helix 15
15
A
325 330Right-handed 310
Helix 16
16
A
333 346Right-handed alpha
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There are 3 sheets in PDB entry 3C5U. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
17 18anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 29first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
49 54anti-parallel
Strand 4
A
103 107anti-parallel
Strand 5
A
88 90anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
156 159anti-parallel
Strand 3
A
163 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il