Analysis of interatomic Contacts of Structural Units in PDB entry:
3C5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C5W entry

There are 3 chains in PDB entry 3C5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9ALA 589
C
 PHE 6LEU 309
P
 ARG 39ILE 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3C5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 21Right-handed alpha
Helix 2
2
A
24 33Right-handed alpha
Helix 3
3
A
34 43Right-handed alpha
Helix 4
4
A
45 403Right-handed alpha
Helix 5
5
A
404 412Right-handed alpha
Helix 6
6
A
416 425Right-handed alpha
Helix 7
7
A
426 435Right-handed alpha
Helix 8
8
A
436 439Right-handed 310
Helix 9
9
A
442 451Right-handed alpha
Helix 10
10
A
455 474Right-handed alpha
Helix 11
11
A
474 481Right-handed alpha
Helix 12
12
A
481 489Right-handed alpha
Helix 13
13
A
490 492Right-handed 310
Helix 14
14
A
494 521Right-handed alpha
Helix 15
15
A
521 528Right-handed alpha
Helix 16
16
A
529 531Right-handed 310
Helix 17
17
A
533 548Right-handed alpha
Helix 18
18
A
549 551Right-handed 310
Helix 19
19
A
552 559Right-handed alpha
Helix 20
20
A
560 569Right-handed alpha
Helix 21
21
A
572 586Right-handed alpha
Helix 22
22
C
6 18Right-handed alpha
Helix 23
23
C
24 41Right-handed alpha
Helix 24
24
C
61 73Right-handed alpha
Helix 25
25
C
92 107Right-handed alpha
Helix 26
26
C
120 128Right-handed alpha
Helix 27
27
C
128 138Right-handed alpha
Helix 28
28
C
140 151Right-handed alpha
Helix 29
29
C
176 183Right-handed alpha
Helix 30
30
C
193 201Right-handed alpha
Helix 31
31
C
221 232Right-handed alpha
Helix 32
32
C
264 268Right-handed 310
Helix 33
33
P
45 49Right-handed 310
Helix 34
34
P
88 91Right-handed 310
Helix 35
35
P
92 101Right-handed alpha
Helix 36
36
P
127 143Right-handed alpha
Helix 37
37
P
156 168Right-handed alpha
Helix 38
38
P
183 199Right-handed alpha
Helix 39
39
P
207 218Right-handed alpha
Helix 40
40
P
223 231Right-handed alpha
Helix 41
41
P
290 296Right-handed 310
Helix 42
42
P
297 303Right-handed alpha
Helix 43
43
P
304 312Right-handed alpha
Helix 44
44
P
322 326Right-handed 310
Helix 45
45
P
327 336Right-handed alpha
Helix 46
46
P
350 355Right-handed alpha
Helix 47
47
P
355 370Right-handed alpha
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There are 7 sheets in PDB entry 3C5W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
156 159parallel
Strand 3
C
163 166anti-parallel
Strand 4
C
236 239parallel
Strand 5
C
256 259parallel
Strand 6
C
248 251anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 113first strand
Strand 2
C
80 82parallel
Strand 3
C
52 55parallel
Strand 4
C
273 278anti-parallel
Strand 5
C
284 289anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 203first strand
Strand 2
C
218 220parallel
Strand 3
C
209 211anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
52 54first strand
Strand 2
P
69 72anti-parallel
Strand 3
P
106 110anti-parallel
Strand 4
P
78 82parallel
Strand 5
P
150 155parallel
Strand 6
P
174 180parallel
Strand 7
P
316 320parallel
Strand 8
P
340 343parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
57 59first strand
Strand 2
P
64 66anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
103 104first strand
Strand 2
P
374 375anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
204 205first strand
Strand 2
P
285 287anti-parallel
Strand 3
P
235 237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il