Analysis of interatomic Contacts of Structural Units in PDB entry:
3C60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C60 entry

There are 8 chains in PDB entry 3C60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1SER 201
B
 ALA 1TRP 236
C
 ILE 1GLU 182
D
 PHE 1ALA 217
E
 ASP 1SER 201
F
 ALA 1TRP 236
G
 ILE 1GLU 182
H
 PHE 1ALA 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3C60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 84Right-handed 310
Helix 2
2
B
80 84Right-handed 310
Helix 3
3
B
94 97Right-handed 310
Helix 4
4
B
127 134Right-handed alpha
Helix 5
5
B
194 198Right-handed alpha
Helix 6
6
C
48 53Right-handed alpha
Helix 7
7
C
57 78Right-handed alpha
Helix 8
8
D
45 48Right-handed 310
Helix 9
9
D
77 79Right-handed 310
Helix 10
10
D
80 90Right-handed alpha
Helix 11
11
D
90 104Right-handed alpha
Helix 12
12
D
104 111Right-handed alpha
Helix 13
13
E
80 84Right-handed 310
Helix 14
14
F
80 84Right-handed 310
Helix 15
15
F
94 97Right-handed 310
Helix 16
16
F
127 134Right-handed alpha
Helix 17
17
F
194 198Right-handed alpha
Helix 18
18
G
48 53Right-handed alpha
Helix 19
19
G
57 78Right-handed alpha
Helix 20
20
H
45 48Right-handed 310
Helix 21
21
H
77 79Right-handed 310
Helix 22
22
H
80 90Right-handed alpha
Helix 23
23
H
90 104Right-handed alpha
Helix 24
24
H
104 111Right-handed alpha
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There are 32 sheets in PDB entry 3C60. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
105 110parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
31 37anti-parallel
Strand 5
A
44 49anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
105 110parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
100 101anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
74 79anti-parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
55 58anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
174 177anti-parallel
Strand 3
A
132 137anti-parallel
Strand 4
A
119 125anti-parallel
Strand 5
B
120 125anti-parallel
Strand 6
B
140 144anti-parallel
Strand 7
B
184 193anti-parallel
Strand 8
B
166 168anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 138first strand
Strand 2
B
184 193anti-parallel
Strand 3
B
173 174anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
168 170anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
73 76anti-parallel
Strand 4
B
63 65anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
106 110parallel
Strand 3
B
85 92anti-parallel
Strand 4
B
29 36anti-parallel
Strand 5
B
40 47anti-parallel
Strand 6
B
54 55anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
106 110parallel
Strand 3
B
85 92anti-parallel
Strand 4
B
99 101anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
151 157anti-parallel
Strand 3
B
204 210anti-parallel
Strand 4
B
229 235anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 44first strand
Strand 2
C
30 36anti-parallel
Strand 3
C
20 27anti-parallel
Strand 4
C
5 16anti-parallel
Strand 5
D
33 44anti-parallel
Strand 6
D
49 58anti-parallel
Strand 7
D
62 67anti-parallel
Strand 8
D
73 75anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
104 113anti-parallel
Strand 3
C
146 154anti-parallel
Strand 4
C
133 135anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
104 113anti-parallel
Strand 3
C
146 154anti-parallel
Strand 4
C
139 140anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 129first strand
Strand 2
C
119 124anti-parallel
Strand 3
C
162 167anti-parallel
Strand 4
C
175 179anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
128 130first strand
Strand 2
D
140 147anti-parallel
Strand 3
D
183 190anti-parallel
Strand 4
D
169 171anti-parallel
Strand 5
H
169 171anti-parallel
Strand 6
H
183 190anti-parallel
Strand 7
H
140 147anti-parallel
Strand 8
H
128 130anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
164 165first strand
Strand 2
D
155 159anti-parallel
Strand 3
D
197 203anti-parallel
Strand 4
D
211 216anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 13first strand
Strand 2
E
105 110parallel
Strand 3
E
85 92anti-parallel
Strand 4
E
31 37anti-parallel
Strand 5
E
44 49anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 13first strand
Strand 2
E
105 110parallel
Strand 3
E
85 92anti-parallel
Strand 4
E
100 101anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
16 20first strand
Strand 2
E
74 79anti-parallel
Strand 3
E
61 64anti-parallel
Strand 4
E
55 58anti-parallel
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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
153 155first strand
Strand 2
E
174 177anti-parallel
Strand 3
E
132 137anti-parallel
Strand 4
E
119 125anti-parallel
Strand 5
F
124 125anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
161 163first strand
Strand 2
E
168 170anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 5first strand
Strand 2
F
17 23anti-parallel
Strand 3
F
73 76anti-parallel
Strand 4
F
63 65anti-parallel
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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 12first strand
Strand 2
F
106 110parallel
Strand 3
F
85 92anti-parallel
Strand 4
F
29 35anti-parallel
Strand 5
F
41 47anti-parallel
Strand 6
F
54 55anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 12first strand
Strand 2
F
106 110parallel
Strand 3
F
85 92anti-parallel
Strand 4
F
99 101anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
120 121first strand
Strand 2
F
141 144anti-parallel
Strand 3
F
184 193anti-parallel
Strand 4
F
166 168anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
136 138first strand
Strand 2
F
184 193anti-parallel
Strand 3
F
173 174anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
160 161first strand
Strand 2
F
151 157anti-parallel
Strand 3
F
204 210anti-parallel
Strand 4
F
229 235anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
41 44first strand
Strand 2
G
30 36anti-parallel
Strand 3
G
20 27anti-parallel
Strand 4
G
5 16anti-parallel
Strand 5
H
33 44anti-parallel
Strand 6
H
49 58anti-parallel
Strand 7
H
61 67anti-parallel
Strand 8
H
73 75anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
92 94first strand
Strand 2
G
104 113anti-parallel
Strand 3
G
146 154anti-parallel
Strand 4
G
133 135anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
92 94first strand
Strand 2
G
104 113anti-parallel
Strand 3
G
146 154anti-parallel
Strand 4
G
139 140anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
127 129first strand
Strand 2
G
119 124anti-parallel
Strand 3
G
162 167anti-parallel
Strand 4
G
175 179anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
164 165first strand
Strand 2
H
155 159anti-parallel
Strand 3
H
197 203anti-parallel
Strand 4
H
211 216anti-parallel
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