Analysis of interatomic Contacts of Structural Units in PDB entry:
3C6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C6F entry

There are 4 chains in PDB entry 3C6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 94SER 230
B
 PRO 94SER 230
C
 PRO 94SER 230
D
 PRO 94THR 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3C6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 111Right-handed alpha
Helix 2
2
A
114 125Right-handed alpha
Helix 3
3
A
129 131Right-handed 310
Helix 4
4
A
150 153Right-handed 310
Helix 5
5
A
180 188Right-handed alpha
Helix 6
6
A
190 201Right-handed alpha
Helix 7
7
A
205 207Right-handed 310
Helix 8
8
B
104 111Right-handed alpha
Helix 9
9
B
114 125Right-handed alpha
Helix 10
10
B
129 131Right-handed 310
Helix 11
11
B
150 153Right-handed 310
Helix 12
12
B
180 187Right-handed alpha
Helix 13
13
B
190 201Right-handed alpha
Helix 14
14
B
205 207Right-handed 310
Helix 15
15
C
104 111Right-handed alpha
Helix 16
16
C
114 124Right-handed alpha
Helix 17
17
C
129 131Right-handed 310
Helix 18
18
C
150 153Right-handed 310
Helix 19
19
C
180 187Right-handed alpha
Helix 20
20
C
190 201Right-handed alpha
Helix 21
21
C
225 230Right-handed alpha
Helix 22
22
D
104 111Right-handed alpha
Helix 23
23
D
114 125Right-handed alpha
Helix 24
24
D
129 131Right-handed 310
Helix 25
25
D
150 153Right-handed 310
Helix 26
26
D
180 188Right-handed alpha
Helix 27
27
D
190 199Right-handed alpha
Helix 28
28
D
200 202Right-handed 310
Helix 29
29
D
205 207Right-handed 310
Helix 30
30
D
225 231Right-handed alpha
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There are 8 sheets in PDB entry 3C6F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
95 99anti-parallel
Strand 3
A
133 138anti-parallel
Strand 4
A
144 148anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
171 175anti-parallel
Strand 3
A
209 214anti-parallel
Strand 4
A
221 224anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
95 99anti-parallel
Strand 3
B
133 138anti-parallel
Strand 4
B
144 148anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
171 175anti-parallel
Strand 3
B
209 214anti-parallel
Strand 4
B
221 224anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 103first strand
Strand 2
C
95 99anti-parallel
Strand 3
C
133 138anti-parallel
Strand 4
C
144 148anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 179first strand
Strand 2
C
171 175anti-parallel
Strand 3
C
209 214anti-parallel
Strand 4
C
221 224anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 103first strand
Strand 2
D
95 99anti-parallel
Strand 3
D
133 138anti-parallel
Strand 4
D
144 148anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
178 179first strand
Strand 2
D
171 175anti-parallel
Strand 3
D
209 214anti-parallel
Strand 4
D
221 224anti-parallel
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