Analysis of interatomic Contacts of Structural Units in PDB entry:
3C6H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C6H entry

There are 2 chains in PDB entry 3C6H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 367LYS 562
B
 GLY 359GLY 561
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3C6H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
435 447Right-handed alpha
Helix 2
2
A
459 469Right-handed alpha
Helix 3
3
A
489 505Right-handed alpha
Helix 4
4
A
513 520Right-handed alpha
Helix 5
5
A
538 552Right-handed alpha
Helix 6
6
A
555 560Right-handed alpha
Helix 7
7
B
363 368Right-handed alpha
Helix 8
8
B
435 447Right-handed alpha
Helix 9
9
B
459 469Right-handed alpha
Helix 10
10
B
490 506Right-handed alpha
Helix 11
11
B
513 521Right-handed alpha
Helix 12
12
B
538 553Right-handed alpha
Helix 13
13
B
555 560Right-handed alpha
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There are 4 sheets in PDB entry 3C6H. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
420 428anti-parallel
Strand 3
A
408 414anti-parallel
Strand 4
A
393 398anti-parallel
Strand 5
A
452 454parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
420 428anti-parallel
Strand 3
A
509 510parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
420 428anti-parallel
Strand 3
B
408 414anti-parallel
Strand 4
B
393 398anti-parallel
Strand 5
B
452 456parallel
Strand 6
B
486 487parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
420 428anti-parallel
Strand 3
B
509 510parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il