Analysis of interatomic Contacts of Structural Units in PDB entry:
3C8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C8C entry

There are 2 chains in PDB entry 3C8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 61SER 300
B
 SER 61SER 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 3C8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 102Right-handed alpha
Helix 2
2
A
104 113Right-handed alpha
Helix 3
3
A
114 121Right-handed alpha
Helix 4
4
A
148 151Right-handed 310
Helix 5
5
A
152 162Right-handed alpha
Helix 6
6
A
203 212Right-handed alpha
Helix 7
7
A
236 240Right-handed 310
Helix 8
8
A
244 249Right-handed alpha
Helix 9
9
A
286 299Right-handed alpha
Helix 10
10
B
61 102Right-handed alpha
Helix 11
11
B
104 113Right-handed alpha
Helix 12
12
B
114 121Right-handed alpha
Helix 13
13
B
148 151Right-handed 310
Helix 14
14
B
152 162Right-handed alpha
Helix 15
15
B
203 212Right-handed alpha
Helix 16
16
B
236 240Right-handed 310
Helix 17
17
B
244 249Right-handed alpha
Helix 18
18
B
287 300Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3C8C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
124 128anti-parallel
Strand 3
A
194 202anti-parallel
Strand 4
A
178 187anti-parallel
Strand 5
A
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
124 128anti-parallel
Strand 3
A
194 202anti-parallel
Strand 4
A
178 187anti-parallel
Strand 5
A
170 171anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
A
220 226anti-parallel
Strand 3
A
279 285anti-parallel
Strand 4
A
265 273anti-parallel
Strand 5
A
258 262anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
124 128anti-parallel
Strand 3
B
194 202anti-parallel
Strand 4
B
178 187anti-parallel
Strand 5
B
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
124 128anti-parallel
Strand 3
B
194 202anti-parallel
Strand 4
B
178 187anti-parallel
Strand 5
B
170 171anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 233first strand
Strand 2
B
220 225anti-parallel
Strand 3
B
280 286anti-parallel
Strand 4
B
265 273anti-parallel
Strand 5
B
258 262anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il