Analysis of interatomic Contacts of Structural Units in PDB entry:
3C8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C8E entry

There are 2 chains in PDB entry 3C8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5GLY 288
B
 TYR 6GLY 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3C8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 68Right-handed alpha
Helix 2
2
A
69 73Right-handed 310
Helix 3
3
A
81 88Right-handed 310
Helix 4
4
A
89 96Right-handed alpha
Helix 5
5
A
117 130Right-handed alpha
Helix 6
6
A
136 160Right-handed alpha
Helix 7
7
A
160 167Right-handed alpha
Helix 8
8
A
172 195Right-handed alpha
Helix 9
9
A
206 213Right-handed alpha
Helix 10
10
A
215 222Right-handed alpha
Helix 11
11
A
232 235Right-handed 310
Helix 12
12
A
236 248Right-handed alpha
Helix 13
13
A
249 256Right-handed alpha
Helix 14
14
A
264 268Right-handed 310
Helix 15
15
A
276 281Right-handed alpha
Helix 16
16
A
282 286Right-handed 310
Helix 17
17
B
52 68Right-handed alpha
Helix 18
18
B
69 73Right-handed 310
Helix 19
19
B
81 88Right-handed 310
Helix 20
20
B
89 96Right-handed alpha
Helix 21
21
B
117 130Right-handed alpha
Helix 22
22
B
136 160Right-handed alpha
Helix 23
23
B
160 166Right-handed alpha
Helix 24
24
B
172 195Right-handed alpha
Helix 25
25
B
206 213Right-handed alpha
Helix 26
26
B
215 221Right-handed alpha
Helix 27
27
B
227 232Right-handed alpha
Helix 28
28
B
233 235Right-handed 310
Helix 29
29
B
236 248Right-handed alpha
Helix 30
30
B
249 256Right-handed alpha
Helix 31
31
B
264 268Right-handed 310
Helix 32
32
B
276 281Right-handed alpha
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There are 2 sheets in PDB entry 3C8E. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
45 49parallel
Strand 3
A
103 106anti-parallel
Strand 4
A
113 116anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
45 49parallel
Strand 3
B
103 106anti-parallel
Strand 4
B
113 116anti-parallel
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