Analysis of interatomic Contacts of Structural Units in PDB entry:
3C8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C8H entry

There are 4 chains in PDB entry 3C8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6HIS 397
B
 VAL 6HIS 397
C
 VAL 6HIS 397
D
 VAL 6PRO 95
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 3C8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 14Right-handed alpha
Helix 2
2
A
108 120Right-handed alpha
Helix 3
3
A
121 123Right-handed 310
Helix 4
4
A
201 208Right-handed alpha
Helix 5
5
A
211 221Right-handed alpha
Helix 6
6
A
236 244Right-handed alpha
Helix 7
7
A
247 266Right-handed alpha
Helix 8
8
A
271 274Right-handed 310
Helix 9
9
A
281 294Right-handed alpha
Helix 10
10
A
319 327Right-handed alpha
Helix 11
11
A
345 359Right-handed alpha
Helix 12
12
A
362 364Right-handed 310
Helix 13
13
A
376 393Right-handed alpha
Helix 14
14
A
394 397Right-handed 310
Helix 15
15
B
8 14Right-handed alpha
Helix 16
16
B
108 120Right-handed alpha
Helix 17
17
B
121 123Right-handed 310
Helix 18
18
B
201 208Right-handed alpha
Helix 19
19
B
211 221Right-handed alpha
Helix 20
20
B
236 244Right-handed alpha
Helix 21
21
B
247 257Right-handed alpha
Helix 22
22
B
257 266Right-handed alpha
Helix 23
23
B
271 274Right-handed 310
Helix 24
24
B
281 294Right-handed alpha
Helix 25
25
B
319 327Right-handed alpha
Helix 26
26
B
345 359Right-handed alpha
Helix 27
27
B
360 364Right-handed 310
Helix 28
28
B
376 392Right-handed alpha
Helix 29
29
B
393 396Right-handed 310
Helix 30
30
C
8 14Right-handed alpha
Helix 31
31
C
108 120Right-handed alpha
Helix 32
32
C
121 123Right-handed 310
Helix 33
33
C
201 207Right-handed alpha
Helix 34
34
C
211 221Right-handed alpha
Helix 35
35
C
236 244Right-handed alpha
Helix 36
36
C
247 257Right-handed alpha
Helix 37
37
C
257 266Right-handed alpha
Helix 38
38
C
271 273Right-handed 310
Helix 39
39
C
281 294Right-handed alpha
Helix 40
40
C
319 327Right-handed alpha
Helix 41
41
C
345 359Right-handed alpha
Helix 42
42
C
360 364Right-handed 310
Helix 43
43
C
376 392Right-handed alpha
Helix 44
44
C
393 397Right-handed 310
Helix 45
45
D
10 15Right-handed 310
Helix 46
46
D
108 120Right-handed alpha
Helix 47
47
D
121 123Right-handed 310
Helix 48
48
D
201 207Right-handed alpha
Helix 49
49
D
211 221Right-handed alpha
Helix 50
50
D
236 244Right-handed alpha
Helix 51
51
D
247 257Right-handed alpha
Helix 52
52
D
257 266Right-handed alpha
Helix 53
53
D
271 274Right-handed 310
Helix 54
54
D
281 294Right-handed alpha
Helix 55
55
D
319 327Right-handed alpha
Helix 56
56
D
345 359Right-handed alpha
Helix 57
57
D
360 363Right-handed 310
Helix 58
58
D
376 392Right-handed alpha
Helix 59
59
D
393 396Right-handed 310
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There are 13 sheets in PDB entry 3C8H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
28 35anti-parallel
Strand 3
A
76 83anti-parallel
Strand 4
A
69 70anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
88 96anti-parallel
Strand 3
A
140 145anti-parallel
Strand 4
A
132 134anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 172first strand
Strand 2
A
177 185anti-parallel
Strand 3
A
228 232anti-parallel
Strand 4
A
196 199parallel
Strand 5
A
276 280parallel
Strand 6
A
300 304parallel
Strand 7
A
336 342parallel
Strand 8
A
366 371parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 22first strand
Strand 2
B
27 35anti-parallel
Strand 3
B
76 84anti-parallel
Strand 4
B
69 70anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 53first strand
Strand 2
B
88 96anti-parallel
Strand 3
B
140 145anti-parallel
Strand 4
B
132 134anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 172first strand
Strand 2
B
177 185anti-parallel
Strand 3
B
228 232anti-parallel
Strand 4
B
196 200parallel
Strand 5
B
276 280parallel
Strand 6
B
300 304parallel
Strand 7
B
336 342parallel
Strand 8
B
366 371parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 24first strand
Strand 2
C
27 35anti-parallel
Strand 3
C
76 83anti-parallel
Strand 4
C
69 70anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 51first strand
Strand 2
C
93 96anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 91first strand
Strand 2
C
140 145anti-parallel
Strand 3
C
132 134anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 171first strand
Strand 2
C
178 186anti-parallel
Strand 3
C
227 232anti-parallel
Strand 4
C
196 199parallel
Strand 5
C
275 280parallel
Strand 6
C
300 304parallel
Strand 7
C
336 344parallel
Strand 8
C
366 374parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 22first strand
Strand 2
D
27 35anti-parallel
Strand 3
D
76 84anti-parallel
Strand 4
D
69 70anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 53first strand
Strand 2
D
88 96anti-parallel
Strand 3
D
140 145anti-parallel
Strand 4
D
132 134anti-parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
166 172first strand
Strand 2
D
177 185anti-parallel
Strand 3
D
228 232anti-parallel
Strand 4
D
196 199parallel
Strand 5
D
276 280parallel
Strand 6
D
300 304parallel
Strand 7
D
336 342parallel
Strand 8
D
366 371parallel
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