Analysis of interatomic Contacts of Structural Units in PDB entry:
3C8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C8J entry

There are 4 chains in PDB entry 3C8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 136ASP 262
B
 GLY 137ASP 262
C
 GLY 137ASP 262
D
 SER 133ASP 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3C8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
159 170Right-handed alpha
Helix 2
2
A
179 190Right-handed alpha
Helix 3
3
A
218 224Right-handed alpha
Helix 4
4
B
159 170Right-handed alpha
Helix 5
5
B
179 190Right-handed alpha
Helix 6
6
B
218 224Right-handed alpha
Helix 7
7
C
159 169Right-handed alpha
Helix 8
8
C
179 190Right-handed alpha
Helix 9
9
C
218 224Right-handed alpha
Helix 10
10
D
159 170Right-handed alpha
Helix 11
11
D
179 190Right-handed alpha
Helix 12
12
D
218 226Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3C8J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
195 202anti-parallel
Strand 3
A
249 256parallel
Strand 4
A
149 158anti-parallel
Strand 5
A
141 147anti-parallel
Strand 6
B
141 147anti-parallel
Strand 7
B
149 158anti-parallel
Strand 8
B
249 256anti-parallel
Strand 9
B
195 202parallel
Strand 10
B
207 210anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
232 235anti-parallel
Strand 3
A
195 202anti-parallel
Strand 4
A
249 256parallel
Strand 5
A
149 158anti-parallel
Strand 6
A
141 147anti-parallel
Strand 7
B
141 147anti-parallel
Strand 8
B
149 158anti-parallel
Strand 9
B
249 256anti-parallel
Strand 10
B
195 202parallel
Strand 11
B
232 235anti-parallel
Strand 12
B
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 210first strand
Strand 2
C
195 202anti-parallel
Strand 3
C
249 256parallel
Strand 4
C
149 158anti-parallel
Strand 5
C
141 147anti-parallel
Strand 6
D
141 147anti-parallel
Strand 7
D
149 158anti-parallel
Strand 8
D
249 256anti-parallel
Strand 9
D
195 202parallel
Strand 10
D
207 210anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 243first strand
Strand 2
C
232 235anti-parallel
Strand 3
C
195 202anti-parallel
Strand 4
C
249 256parallel
Strand 5
C
149 158anti-parallel
Strand 6
C
141 147anti-parallel
Strand 7
D
141 147anti-parallel
Strand 8
D
149 158anti-parallel
Strand 9
D
249 256anti-parallel
Strand 10
D
195 202parallel
Strand 11
D
232 235anti-parallel
Strand 12
D
240 243anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il