Analysis of interatomic Contacts of Structural Units in PDB entry:
3C8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C8O entry

There are 2 chains in PDB entry 3C8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 2PRO 161
B
 MET 1PRO 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3C8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 12Right-handed alpha
Helix 2
2
A
45 53Right-handed alpha
Helix 3
3
A
75 85Right-handed alpha
Helix 4
4
A
98 103Right-handed alpha
Helix 5
5
B
4 12Right-handed alpha
Helix 6
6
B
45 52Right-handed alpha
Helix 7
7
B
75 85Right-handed alpha
Helix 8
8
B
98 103Right-handed alpha
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There are 6 sheets in PDB entry 3C8O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
151 154anti-parallel
Strand 3
A
143 146anti-parallel
Strand 4
A
32 40anti-parallel
Strand 5
A
59 64parallel
Strand 6
A
89 96parallel
Strand 7
A
108 114parallel
Strand 8
A
24 25anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
151 154anti-parallel
Strand 3
A
143 146anti-parallel
Strand 4
A
32 40anti-parallel
Strand 5
A
126 127anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
136 138anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
151 154anti-parallel
Strand 3
B
143 146anti-parallel
Strand 4
B
32 40anti-parallel
Strand 5
B
59 64parallel
Strand 6
B
89 96parallel
Strand 7
B
108 114parallel
Strand 8
B
24 25anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
151 154anti-parallel
Strand 3
B
143 146anti-parallel
Strand 4
B
32 40anti-parallel
Strand 5
B
126 127anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
136 138anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il