Analysis of interatomic Contacts of Structural Units in PDB entry:
3C8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C8U entry

There is 1 chain in PDB entry 3C8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLN 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3C8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
34 48Right-handed alpha
Helix 3
3
A
58 61Right-handed 310
Helix 4
4
A
63 68Right-handed alpha
Helix 5
5
A
69 71Right-handed 310
Helix 6
6
A
72 76Right-handed 310
Helix 7
7
A
78 82Right-handed 310
Helix 8
8
A
83 97Right-handed alpha
Helix 9
9
A
139 146Right-handed 310
Helix 10
10
A
156 171Right-handed alpha
Helix 11
11
A
174 184Right-handed alpha
Helix 12
12
A
184 195Right-handed alpha
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There are 2 sheets in PDB entry 3C8U. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
125 130parallel
Strand 3
A
22 27parallel
Strand 4
A
149 153parallel
Strand 5
A
202 204parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 106first strand
Strand 2
A
111 119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il