Analysis of interatomic Contacts of Structural Units in PDB entry:
3C8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3C8V entry

There are 4 chains in PDB entry 3C8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	ASN 475
B	GLY 0	ASN 475
C	GLY 0	ASN 475
D	GLY 0	ASN 475

There are 39 helices in PDB entry 3C8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	19	Right-handed alpha
Helix 2	2	A	20	23	Right-handed 310
Helix 3	3	A	26	31	Right-handed alpha
Helix 4	4	A	34	40	Right-handed alpha
Helix 5	5	A	211	216	Right-handed alpha
Helix 6	6	A	229	237	Right-handed alpha
Helix 7	7	A	239	248	Right-handed alpha
Helix 8	8	A	380	387	Right-handed alpha
Helix 9	9	A	391	395	Right-handed alpha
Helix 10	10	A	412	431	Right-handed alpha
Helix 11	11	B	2	19	Right-handed alpha
Helix 12	12	B	26	31	Right-handed alpha
Helix 13	13	B	34	40	Right-handed alpha
Helix 14	14	B	211	216	Right-handed alpha
Helix 15	15	B	229	237	Right-handed alpha
Helix 16	16	B	238	246	Right-handed alpha
Helix 17	17	B	380	387	Right-handed alpha
Helix 18	18	B	391	395	Right-handed alpha
Helix 19	19	B	412	430	Right-handed alpha
Helix 20	20	C	2	19	Right-handed alpha
Helix 21	21	C	26	31	Right-handed alpha
Helix 22	22	C	34	40	Right-handed alpha
Helix 23	23	C	211	216	Right-handed alpha
Helix 24	24	C	229	237	Right-handed alpha
Helix 25	25	C	239	247	Right-handed alpha
Helix 26	26	C	380	387	Right-handed alpha
Helix 27	27	C	391	395	Right-handed alpha
Helix 28	28	C	412	430	Right-handed alpha
Helix 29	29	C	441	445	Right-handed 310
Helix 30	30	D	2	19	Right-handed alpha
Helix 31	31	D	20	23	Right-handed 310
Helix 32	32	D	26	31	Right-handed alpha
Helix 33	33	D	34	40	Right-handed alpha
Helix 34	34	D	211	216	Right-handed alpha
Helix 35	35	D	229	237	Right-handed alpha
Helix 36	36	D	239	245	Right-handed alpha
Helix 37	37	D	380	387	Right-handed alpha
Helix 38	38	D	391	395	Right-handed alpha
Helix 39	39	D	412	430	Right-handed alpha

There are 26 sheets in PDB entry 3C8V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	403	first strand
Strand 2	A	406	411	anti-parallel
Strand 3	A	204	209	anti-parallel
Strand 4	A	195	199	anti-parallel
Strand 5	A	180	182	parallel
Strand 6	A	164	166	parallel
Strand 7	A	148	150	parallel
Strand 8	A	122	124	parallel
Strand 9	A	83	85	parallel
Strand 10	A	67	69	parallel
Strand 11	A	44	49	parallel
Strand 12	A	449	454	anti-parallel

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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	169	171	parallel
Strand 3	A	154	155	parallel
Strand 4	A	135	139	parallel
Strand 5	A	110	114	parallel
Strand 6	A	71	75	parallel
Strand 7	A	55	59	parallel
Strand 8	A	468	472	anti-parallel
Strand 9	B	468	472	anti-parallel
Strand 10	B	56	59	anti-parallel
Strand 11	B	72	75	parallel
Strand 12	B	110	114	parallel
Strand 13	B	135	139	parallel
Strand 14	B	154	155	parallel
Strand 15	B	169	171	parallel
Strand 16	B	185	187	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	117	119	parallel
Strand 3	A	142	143	parallel
Strand 4	A	158	159	parallel
Strand 5	A	174	175	parallel
Strand 6	A	190	191	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	101	104	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	280	281	parallel
Strand 3	A	297	298	parallel
Strand 4	A	314	315	parallel
Strand 5	A	331	332	parallel
Strand 6	A	353	354	parallel
Strand 7	A	372	374	parallel
Strand 8	A	388	390	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	270	first strand
Strand 2	A	286	292	parallel
Strand 3	A	303	311	parallel
Strand 4	A	324	328	parallel
Strand 5	A	346	348	parallel
Strand 6	A	366	368	parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	286	292	parallel
Strand 3	A	303	311	parallel
Strand 4	A	320	322	parallel
Strand 5	A	337	339	parallel
Strand 6	A	359	361	parallel
Strand 7	A	377	378	parallel

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There are 12 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	403	first strand
Strand 2	B	406	411	anti-parallel
Strand 3	B	204	209	anti-parallel
Strand 4	B	195	200	anti-parallel
Strand 5	B	180	182	parallel
Strand 6	B	164	166	parallel
Strand 7	B	148	150	parallel
Strand 8	B	122	124	parallel
Strand 9	B	83	85	parallel
Strand 10	B	67	69	parallel
Strand 11	B	44	49	parallel
Strand 12	B	449	454	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	117	119	parallel
Strand 3	B	142	143	parallel
Strand 4	B	158	159	parallel
Strand 5	B	174	175	parallel
Strand 6	B	190	191	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	103	104	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	280	281	parallel
Strand 3	B	297	298	parallel
Strand 4	B	314	315	parallel
Strand 5	B	331	332	parallel
Strand 6	B	353	354	parallel
Strand 7	B	372	374	parallel
Strand 8	B	388	390	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	270	first strand
Strand 2	B	286	292	parallel
Strand 3	B	303	311	parallel
Strand 4	B	324	328	parallel
Strand 5	B	346	348	parallel
Strand 6	B	366	368	parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	286	292	parallel
Strand 3	B	303	311	parallel
Strand 4	B	320	322	parallel
Strand 5	B	337	339	parallel
Strand 6	B	359	361	parallel
Strand 7	B	377	378	parallel

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There are 12 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	403	first strand
Strand 2	C	406	411	anti-parallel
Strand 3	C	204	209	anti-parallel
Strand 4	C	195	199	anti-parallel
Strand 5	C	180	182	parallel
Strand 6	C	164	166	parallel
Strand 7	C	148	150	parallel
Strand 8	C	122	124	parallel
Strand 9	C	83	85	parallel
Strand 10	C	67	69	parallel
Strand 11	C	44	48	parallel
Strand 12	C	450	454	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	C	117	119	parallel
Strand 3	C	135	143	parallel
Strand 4	C	154	159	parallel
Strand 5	C	174	175	parallel
Strand 6	C	190	191	parallel

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There are 16 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	169	171	parallel
Strand 3	C	154	159	parallel
Strand 4	C	135	143	parallel
Strand 5	C	110	114	parallel
Strand 6	C	72	75	parallel
Strand 7	C	56	59	parallel
Strand 8	C	468	472	anti-parallel
Strand 9	D	468	472	anti-parallel
Strand 10	D	56	59	anti-parallel
Strand 11	D	72	75	parallel
Strand 12	D	110	114	parallel
Strand 13	D	135	139	parallel
Strand 14	D	154	155	parallel
Strand 15	D	169	171	parallel
Strand 16	D	185	187	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	96	first strand
Strand 2	C	103	104	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	C	280	281	parallel
Strand 3	C	297	298	parallel
Strand 4	C	314	315	parallel
Strand 5	C	331	332	parallel
Strand 6	C	353	354	parallel
Strand 7	C	372	374	parallel
Strand 8	C	388	390	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	270	first strand
Strand 2	C	286	288	parallel
Strand 3	C	303	305	parallel
Strand 4	C	320	322	parallel
Strand 5	C	337	339	parallel
Strand 6	C	359	361	parallel
Strand 7	C	377	378	parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	275	first strand
Strand 2	C	291	292	parallel
Strand 3	C	308	311	parallel
Strand 4	C	324	328	parallel
Strand 5	C	346	348	parallel
Strand 6	C	366	368	parallel

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There are 12 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	403	first strand
Strand 2	D	406	411	anti-parallel
Strand 3	D	204	209	anti-parallel
Strand 4	D	195	200	anti-parallel
Strand 5	D	180	182	parallel
Strand 6	D	164	166	parallel
Strand 7	D	148	150	parallel
Strand 8	D	122	124	parallel
Strand 9	D	83	85	parallel
Strand 10	D	67	69	parallel
Strand 11	D	44	48	parallel
Strand 12	D	450	454	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	80	first strand
Strand 2	D	117	119	parallel
Strand 3	D	142	143	parallel
Strand 4	D	158	159	parallel
Strand 5	D	174	175	parallel
Strand 6	D	190	191	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	101	104	anti-parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	280	281	parallel
Strand 3	D	297	298	parallel
Strand 4	D	314	315	parallel
Strand 5	D	331	332	parallel
Strand 6	D	353	354	parallel
Strand 7	D	372	374	parallel
Strand 8	D	388	390	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	270	first strand
Strand 2	D	286	292	parallel
Strand 3	D	303	311	parallel
Strand 4	D	324	328	parallel
Strand 5	D	346	348	parallel
Strand 6	D	366	368	parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	275	first strand
Strand 2	D	286	292	parallel
Strand 3	D	303	311	parallel
Strand 4	D	320	322	parallel
Strand 5	D	337	339	parallel
Strand 6	D	359	361	parallel
Strand 7	D	377	378	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3C8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
3C8V