Analysis of interatomic Contacts of Structural Units in PDB entry:
3C8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C8Z entry

There are 2 chains in PDB entry 3C8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 412
B
 HIS -1LEU 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3C8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 72Right-handed alpha
Helix 2
2
A
86 97Right-handed alpha
Helix 3
3
A
99 118Right-handed alpha
Helix 4
4
A
132 146Right-handed alpha
Helix 5
5
A
177 188Right-handed alpha
Helix 6
6
A
226 239Right-handed alpha
Helix 7
7
A
251 253Right-handed 310
Helix 8
8
A
255 269Right-handed alpha
Helix 9
9
A
299 306Right-handed alpha
Helix 10
10
A
309 319Right-handed alpha
Helix 11
11
A
329 348Right-handed alpha
Helix 12
12
A
355 368Right-handed alpha
Helix 13
13
A
371 390Right-handed alpha
Helix 14
14
A
395 409Right-handed alpha
Helix 15
15
B
52 72Right-handed alpha
Helix 16
16
B
86 97Right-handed alpha
Helix 17
17
B
99 118Right-handed alpha
Helix 18
18
B
132 146Right-handed alpha
Helix 19
19
B
177 188Right-handed alpha
Helix 20
20
B
226 239Right-handed alpha
Helix 21
21
B
251 253Right-handed 310
Helix 22
22
B
255 269Right-handed alpha
Helix 23
23
B
299 306Right-handed alpha
Helix 24
24
B
309 319Right-handed alpha
Helix 25
25
B
329 348Right-handed alpha
Helix 26
26
B
355 368Right-handed alpha
Helix 27
27
B
371 390Right-handed alpha
Helix 28
28
B
395 409Right-handed alpha
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There are 8 sheets in PDB entry 3C8Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
28 31anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
75 82parallel
Strand 3
A
37 42parallel
Strand 4
A
243 249parallel
Strand 5
A
274 280parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
160 162anti-parallel
Strand 3
A
203 208anti-parallel
Strand 4
A
223 225anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 284first strand
Strand 2
A
326 327parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
28 31anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
76 82parallel
Strand 3
B
38 42parallel
Strand 4
B
245 249parallel
Strand 5
B
276 280parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
160 162anti-parallel
Strand 3
B
203 208anti-parallel
Strand 4
B
223 225anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 284first strand
Strand 2
B
326 327parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il