Analysis of interatomic Contacts of Structural Units in PDB entry:
3C96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C96 entry

There is 1 chain in PDB entry 3C96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4LEU 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3C96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
50 60Right-handed alpha
Helix 3
3
A
62 70Right-handed alpha
Helix 4
4
A
92 96Right-handed 310
Helix 5
5
A
106 122Right-handed alpha
Helix 6
6
A
169 176Right-handed alpha
Helix 7
7
A
222 227Right-handed alpha
Helix 8
8
A
241 245Right-handed alpha
Helix 9
9
A
258 267Right-handed alpha
Helix 10
10
A
275 282Right-handed alpha
Helix 11
11
A
309 314Right-handed alpha
Helix 12
12
A
322 340Right-handed alpha
Helix 13
13
A
342 378Right-handed alpha
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There are 4 sheets in PDB entry 3C96. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
30 35parallel
Strand 3
A
6 10parallel
Strand 4
A
160 163parallel
Strand 5
A
305 307parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
101 105anti-parallel
Strand 3
A
71 73anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 90first strand
Strand 2
A
75 79anti-parallel
Strand 3
A
204 209parallel
Strand 4
A
215 220anti-parallel
Strand 5
A
231 240anti-parallel
Strand 6
A
183 196anti-parallel
Strand 7
A
285 293anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 138first strand
Strand 2
A
141 148anti-parallel
Strand 3
A
153 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il