Analysis of interatomic Contacts of Structural Units in PDB entry:
3C9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C9F entry

There are 2 chains in PDB entry 3C9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16GLU 561
B
 SER 16ASN 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 3C9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 49Right-handed 310
Helix 2
2
A
51 69Right-handed alpha
Helix 3
3
A
85 90Right-handed alpha
Helix 4
4
A
98 103Right-handed alpha
Helix 5
5
A
113 117Right-handed 310
Helix 6
6
A
119 134Right-handed alpha
Helix 7
7
A
191 196Right-handed alpha
Helix 8
8
A
198 205Right-handed alpha
Helix 9
9
A
225 238Right-handed alpha
Helix 10
10
A
283 287Right-handed 310
Helix 11
11
A
289 293Right-handed alpha
Helix 12
12
A
302 311Right-handed alpha
Helix 13
13
A
318 335Right-handed alpha
Helix 14
14
A
360 368Right-handed alpha
Helix 15
15
A
369 373Right-handed 310
Helix 16
16
A
388 390Right-handed 310
Helix 17
17
A
401 408Right-handed alpha
Helix 18
18
A
421 425Right-handed alpha
Helix 19
19
A
426 433Right-handed alpha
Helix 20
20
A
444 449Right-handed 310
Helix 21
21
A
522 533Right-handed alpha
Helix 22
22
A
548 559Right-handed alpha
Helix 23
23
B
45 49Right-handed 310
Helix 24
24
B
51 69Right-handed alpha
Helix 25
25
B
85 90Right-handed alpha
Helix 26
26
B
98 103Right-handed alpha
Helix 27
27
B
113 117Right-handed 310
Helix 28
28
B
119 129Right-handed alpha
Helix 29
29
B
129 134Right-handed alpha
Helix 30
30
B
191 196Right-handed alpha
Helix 31
31
B
198 205Right-handed alpha
Helix 32
32
B
225 238Right-handed alpha
Helix 33
33
B
283 287Right-handed 310
Helix 34
34
B
289 293Right-handed alpha
Helix 35
35
B
302 311Right-handed alpha
Helix 36
36
B
318 335Right-handed alpha
Helix 37
37
B
360 368Right-handed alpha
Helix 38
38
B
369 373Right-handed 310
Helix 39
39
B
388 390Right-handed 310
Helix 40
40
B
401 408Right-handed alpha
Helix 41
41
B
421 425Right-handed alpha
Helix 42
42
B
426 433Right-handed alpha
Helix 43
43
B
522 533Right-handed alpha
Helix 44
44
B
548 559Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3C9F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
72 77parallel
Strand 3
A
27 32parallel
Strand 4
A
273 279anti-parallel
Strand 5
A
294 300anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
143 146anti-parallel
Strand 3
A
187 189anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
170 175anti-parallel
Strand 3
A
211 215parallel
Strand 4
A
242 247parallel
Strand 5
A
262 267parallel
Strand 6
A
253 259anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 344first strand
Strand 2
A
397 400anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 505first strand
Strand 2
A
381 386anti-parallel
Strand 3
A
513 519parallel
Strand 4
A
414 420anti-parallel
Strand 5
A
542 545anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
490 491parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 110first strand
Strand 2
B
72 77parallel
Strand 3
B
27 32parallel
Strand 4
B
273 279anti-parallel
Strand 5
B
294 300anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
143 146anti-parallel
Strand 3
B
187 189anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 163first strand
Strand 2
B
170 175anti-parallel
Strand 3
B
211 215parallel
Strand 4
B
242 247parallel
Strand 5
B
262 267parallel
Strand 6
B
253 259anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 344first strand
Strand 2
B
397 400anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
500 505first strand
Strand 2
B
381 386anti-parallel
Strand 3
B
513 519parallel
Strand 4
B
414 420anti-parallel
Strand 5
B
542 545anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
472 473first strand
Strand 2
B
490 491parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il