Analysis of interatomic Contacts of Structural Units in PDB entry:
3CB4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3CB4 entry

There are 6 chains in PDB entry 3CB4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	GLY 555
A	MET 1	GLY 555
B	MET 1	GLY 555
C	MET 1	GLY 555
E	MET 1	GLY 555
F	MET 1	GLY 555

There are 97 helices in PDB entry 3CB4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	D	19	28	Right-handed alpha
Helix 2	2	D	81	83	Right-handed 310
Helix 3	3	D	84	95	Right-handed alpha
Helix 4	4	D	110	122	Right-handed alpha
Helix 5	5	D	139	150	Right-handed alpha
Helix 6	6	D	168	180	Right-handed alpha
Helix 7	7	D	264	268	Right-handed 310
Helix 8	8	D	303	305	Right-handed 310
Helix 9	9	D	306	319	Right-handed alpha
Helix 10	10	D	344	358	Right-handed alpha
Helix 11	11	D	386	390	Right-handed 310
Helix 12	12	D	392	394	Right-handed 310
Helix 13	13	D	414	425	Right-handed alpha
Helix 14	14	D	447	452	Right-handed alpha
Helix 15	15	D	454	462	Right-handed alpha
Helix 16	16	D	503	519	Right-handed alpha
Helix 17	17	A	19	28	Right-handed alpha
Helix 18	18	A	81	83	Right-handed 310
Helix 19	19	A	84	94	Right-handed alpha
Helix 20	20	A	109	122	Right-handed alpha
Helix 21	21	A	139	151	Right-handed alpha
Helix 22	22	A	168	180	Right-handed alpha
Helix 23	23	A	264	268	Right-handed 310
Helix 24	24	A	303	305	Right-handed 310
Helix 25	25	A	306	319	Right-handed alpha
Helix 26	26	A	344	358	Right-handed alpha
Helix 27	27	A	386	390	Right-handed 310
Helix 28	28	A	392	394	Right-handed 310
Helix 29	29	A	414	423	Right-handed alpha
Helix 30	30	A	447	452	Right-handed alpha
Helix 31	31	A	454	462	Right-handed alpha
Helix 32	32	A	493	496	Right-handed 310
Helix 33	33	A	503	519	Right-handed alpha
Helix 34	34	B	19	28	Right-handed alpha
Helix 35	35	B	84	94	Right-handed alpha
Helix 36	36	B	110	122	Right-handed alpha
Helix 37	37	B	139	151	Right-handed alpha
Helix 38	38	B	168	180	Right-handed alpha
Helix 39	39	B	264	268	Right-handed 310
Helix 40	40	B	303	305	Right-handed 310
Helix 41	41	B	306	319	Right-handed alpha
Helix 42	42	B	344	358	Right-handed alpha
Helix 43	43	B	386	390	Right-handed 310
Helix 44	44	B	392	394	Right-handed 310
Helix 45	45	B	414	425	Right-handed alpha
Helix 46	46	B	447	452	Right-handed alpha
Helix 47	47	B	454	462	Right-handed alpha
Helix 48	48	B	493	496	Right-handed 310
Helix 49	49	B	503	519	Right-handed alpha
Helix 50	50	C	19	28	Right-handed alpha
Helix 51	51	C	81	83	Right-handed 310
Helix 52	52	C	84	93	Right-handed alpha
Helix 53	53	C	109	122	Right-handed alpha
Helix 54	54	C	139	150	Right-handed alpha
Helix 55	55	C	168	180	Right-handed alpha
Helix 56	56	C	264	268	Right-handed 310
Helix 57	57	C	303	305	Right-handed 310
Helix 58	58	C	306	319	Right-handed alpha
Helix 59	59	C	344	358	Right-handed alpha
Helix 60	60	C	386	390	Right-handed 310
Helix 61	61	C	392	394	Right-handed 310
Helix 62	62	C	414	425	Right-handed alpha
Helix 63	63	C	447	452	Right-handed alpha
Helix 64	64	C	454	462	Right-handed alpha
Helix 65	65	C	503	519	Right-handed alpha
Helix 66	66	E	19	28	Right-handed alpha
Helix 67	67	E	81	83	Right-handed 310
Helix 68	68	E	84	93	Right-handed alpha
Helix 69	69	E	109	122	Right-handed alpha
Helix 70	70	E	139	150	Right-handed alpha
Helix 71	71	E	168	180	Right-handed alpha
Helix 72	72	E	264	268	Right-handed 310
Helix 73	73	E	303	305	Right-handed 310
Helix 74	74	E	306	321	Right-handed alpha
Helix 75	75	E	344	358	Right-handed alpha
Helix 76	76	E	386	390	Right-handed 310
Helix 77	77	E	392	394	Right-handed 310
Helix 78	78	E	414	425	Right-handed alpha
Helix 79	79	E	447	452	Right-handed alpha
Helix 80	80	E	454	462	Right-handed alpha
Helix 81	81	E	493	496	Right-handed 310
Helix 82	82	E	503	519	Right-handed alpha
Helix 83	83	F	19	28	Right-handed alpha
Helix 84	84	F	84	93	Right-handed alpha
Helix 85	85	F	110	122	Right-handed alpha
Helix 86	86	F	139	150	Right-handed alpha
Helix 87	87	F	168	180	Right-handed alpha
Helix 88	88	F	303	305	Right-handed 310
Helix 89	89	F	306	319	Right-handed alpha
Helix 90	90	F	344	358	Right-handed alpha
Helix 91	91	F	386	390	Right-handed 310
Helix 92	92	F	392	394	Right-handed 310
Helix 93	93	F	414	425	Right-handed alpha
Helix 94	94	F	447	452	Right-handed alpha
Helix 95	95	F	454	462	Right-handed alpha
Helix 96	96	F	493	496	Right-handed 310
Helix 97	97	F	503	519	Right-handed alpha

There are 52 sheets in PDB entry 3CB4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	64	first strand
Strand 2	D	70	77	anti-parallel
Strand 3	D	4	10	parallel
Strand 4	D	97	103	parallel
Strand 5	D	125	131	parallel
Strand 6	D	159	161	parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	233	first strand
Strand 2	D	222	225	anti-parallel
Strand 3	D	273	276	anti-parallel
Strand 4	D	192	201	anti-parallel
Strand 5	D	205	214	anti-parallel
Strand 6	D	255	259	anti-parallel
Strand 7	D	236	240	anti-parallel
Strand 8	D	244	246	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	218	first strand
Strand 2	D	249	250	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	331	first strand
Strand 2	D	335	342	anti-parallel
Strand 3	D	295	301	anti-parallel
Strand 4	D	363	365	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	331	first strand
Strand 2	D	335	342	anti-parallel
Strand 3	D	295	301	anti-parallel
Strand 4	D	369	370	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	384	first strand
Strand 2	D	372	376	anti-parallel
Strand 3	D	396	411	anti-parallel
Strand 4	D	438	446	anti-parallel
Strand 5	D	428	433	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	384	first strand
Strand 2	D	372	376	anti-parallel
Strand 3	D	396	411	anti-parallel
Strand 4	D	467	477	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	500	first strand
Strand 2	D	480	487	anti-parallel
Strand 3	D	526	532	anti-parallel
Strand 4	D	535	542	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	64	first strand
Strand 2	A	70	76	anti-parallel
Strand 3	A	4	10	parallel
Strand 4	A	97	103	parallel
Strand 5	A	125	131	parallel
Strand 6	A	159	161	parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	222	225	anti-parallel
Strand 3	A	273	276	anti-parallel
Strand 4	A	192	201	anti-parallel
Strand 5	A	205	214	anti-parallel
Strand 6	A	255	259	anti-parallel
Strand 7	A	236	240	anti-parallel
Strand 8	A	244	247	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	218	first strand
Strand 2	A	249	250	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	331	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	295	301	anti-parallel
Strand 4	A	363	365	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	331	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	295	301	anti-parallel
Strand 4	A	369	370	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	384	first strand
Strand 2	A	372	376	anti-parallel
Strand 3	A	396	411	anti-parallel
Strand 4	A	438	446	anti-parallel
Strand 5	A	428	435	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	384	first strand
Strand 2	A	372	376	anti-parallel
Strand 3	A	396	411	anti-parallel
Strand 4	A	470	477	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	480	487	anti-parallel
Strand 3	A	497	500	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	480	487	anti-parallel
Strand 3	A	526	532	anti-parallel
Strand 4	A	535	542	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	64	first strand
Strand 2	B	70	77	anti-parallel
Strand 3	B	4	10	parallel
Strand 4	B	97	103	parallel
Strand 5	B	125	131	parallel
Strand 6	B	159	161	parallel

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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	233	first strand
Strand 2	B	222	225	anti-parallel
Strand 3	B	273	276	anti-parallel
Strand 4	B	192	201	anti-parallel
Strand 5	B	205	214	anti-parallel
Strand 6	B	255	259	anti-parallel
Strand 7	B	236	240	anti-parallel
Strand 8	B	244	246	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	218	first strand
Strand 2	B	249	250	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	331	first strand
Strand 2	B	335	342	anti-parallel
Strand 3	B	295	301	anti-parallel
Strand 4	B	363	365	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	331	first strand
Strand 2	B	335	342	anti-parallel
Strand 3	B	295	301	anti-parallel
Strand 4	B	369	370	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	384	first strand
Strand 2	B	372	376	anti-parallel
Strand 3	B	396	411	anti-parallel
Strand 4	B	438	446	anti-parallel
Strand 5	B	428	435	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	384	first strand
Strand 2	B	372	376	anti-parallel
Strand 3	B	396	411	anti-parallel
Strand 4	B	470	477	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	480	487	anti-parallel
Strand 3	B	497	500	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	480	487	anti-parallel
Strand 3	B	526	532	anti-parallel
Strand 4	B	535	542	anti-parallel

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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	64	first strand
Strand 2	C	70	76	anti-parallel
Strand 3	C	4	10	parallel
Strand 4	C	97	103	parallel
Strand 5	C	125	131	parallel
Strand 6	C	159	160	parallel

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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	233	first strand
Strand 2	C	222	225	anti-parallel
Strand 3	C	273	276	anti-parallel
Strand 4	C	192	201	anti-parallel
Strand 5	C	205	214	anti-parallel
Strand 6	C	255	259	anti-parallel
Strand 7	C	236	240	anti-parallel
Strand 8	C	244	247	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	218	first strand
Strand 2	C	249	250	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	331	first strand
Strand 2	C	335	342	anti-parallel
Strand 3	C	295	301	anti-parallel
Strand 4	C	363	365	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	331	first strand
Strand 2	C	335	342	anti-parallel
Strand 3	C	295	301	anti-parallel
Strand 4	C	369	370	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	384	first strand
Strand 2	C	372	376	anti-parallel
Strand 3	C	396	411	anti-parallel
Strand 4	C	438	446	anti-parallel
Strand 5	C	428	434	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	384	first strand
Strand 2	C	372	376	anti-parallel
Strand 3	C	396	411	anti-parallel
Strand 4	C	467	477	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	500	first strand
Strand 2	C	480	487	anti-parallel
Strand 3	C	526	532	anti-parallel
Strand 4	C	535	542	anti-parallel

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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	64	first strand
Strand 2	E	70	77	anti-parallel
Strand 3	E	4	10	parallel
Strand 4	E	97	103	parallel
Strand 5	E	125	131	parallel
Strand 6	E	159	161	parallel

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There are 8 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	231	233	first strand
Strand 2	E	222	225	anti-parallel
Strand 3	E	273	276	anti-parallel
Strand 4	E	192	201	anti-parallel
Strand 5	E	205	214	anti-parallel
Strand 6	E	255	259	anti-parallel
Strand 7	E	236	240	anti-parallel
Strand 8	E	244	246	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	218	first strand
Strand 2	E	249	250	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	331	first strand
Strand 2	E	335	342	anti-parallel
Strand 3	E	295	301	anti-parallel
Strand 4	E	363	365	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	331	first strand
Strand 2	E	335	342	anti-parallel
Strand 3	E	295	301	anti-parallel
Strand 4	E	369	370	anti-parallel

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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	381	384	first strand
Strand 2	E	372	376	anti-parallel
Strand 3	E	396	411	anti-parallel
Strand 4	E	438	446	anti-parallel
Strand 5	E	428	435	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	381	384	first strand
Strand 2	E	372	376	anti-parallel
Strand 3	E	396	411	anti-parallel
Strand 4	E	467	477	anti-parallel

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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	490	491	first strand
Strand 2	E	480	487	anti-parallel
Strand 3	E	497	500	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	490	491	first strand
Strand 2	E	480	487	anti-parallel
Strand 3	E	526	532	anti-parallel
Strand 4	E	535	542	anti-parallel

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There are 6 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	64	first strand
Strand 2	F	70	77	anti-parallel
Strand 3	F	4	10	parallel
Strand 4	F	97	103	parallel
Strand 5	F	125	131	parallel
Strand 6	F	159	160	parallel

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There are 8 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	231	233	first strand
Strand 2	F	222	225	anti-parallel
Strand 3	F	273	276	anti-parallel
Strand 4	F	192	201	anti-parallel
Strand 5	F	205	214	anti-parallel
Strand 6	F	255	259	anti-parallel
Strand 7	F	236	240	anti-parallel
Strand 8	F	244	246	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	218	first strand
Strand 2	F	249	250	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	325	331	first strand
Strand 2	F	335	342	anti-parallel
Strand 3	F	295	301	anti-parallel
Strand 4	F	363	365	anti-parallel

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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	325	331	first strand
Strand 2	F	335	342	anti-parallel
Strand 3	F	295	301	anti-parallel
Strand 4	F	369	370	anti-parallel

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There are 5 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	381	384	first strand
Strand 2	F	372	376	anti-parallel
Strand 3	F	396	411	anti-parallel
Strand 4	F	438	446	anti-parallel
Strand 5	F	428	435	anti-parallel

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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	381	384	first strand
Strand 2	F	372	376	anti-parallel
Strand 3	F	396	411	anti-parallel
Strand 4	F	467	477	anti-parallel

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There are 3 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	490	491	first strand
Strand 2	F	480	487	anti-parallel
Strand 3	F	497	500	anti-parallel

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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	490	491	first strand
Strand 2	F	480	487	anti-parallel
Strand 3	F	526	532	anti-parallel
Strand 4	F	535	542	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 3CB4

Analysis of interatomic Contacts of Structural Units in PDB entry:
3CB4