Analysis of interatomic Contacts of Structural Units in PDB entry:
3CBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CBU entry

There are 2 chains in PDB entry 3CBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ARG 211
B
 MSE 1LYS 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3CBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
59 71Right-handed alpha
Helix 3
3
A
80 98Right-handed alpha
Helix 4
4
A
98 104Right-handed alpha
Helix 5
5
A
105 111Right-handed alpha
Helix 6
6
A
116 138Right-handed alpha
Helix 7
7
A
150 172Right-handed alpha
Helix 8
8
A
180 190Right-handed alpha
Helix 9
9
A
191 211Right-handed alpha
Helix 10
10
B
10 23Right-handed alpha
Helix 11
11
B
59 71Right-handed alpha
Helix 12
12
B
80 98Right-handed alpha
Helix 13
13
B
98 104Right-handed alpha
Helix 14
14
B
105 111Right-handed alpha
Helix 15
15
B
116 138Right-handed alpha
Helix 16
16
B
150 172Right-handed alpha
Helix 17
17
B
180 190Right-handed alpha
Helix 18
18
B
191 211Right-handed alpha
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There are 2 sheets in PDB entry 3CBU. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
2 6parallel
Strand 3
A
49 52anti-parallel
Strand 4
A
55 57anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
2 6parallel
Strand 3
B
49 51anti-parallel
Strand 4
B
56 57anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il