Analysis of interatomic Contacts of Structural Units in PDB entry:
3CD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CD7 entry

There are 4 chains in PDB entry 3CD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 459HIS 861
B
 ALA 459HIS 861
C
 PRO 444GLY 860
D
 GLY 458ALA 859
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 73 helices in PDB entry 3CD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
463 473Right-handed alpha
Helix 2
2
A
487 503Right-handed alpha
Helix 3
3
A
507 512Right-handed 310
Helix 4
4
A
518 522Right-handed 310
Helix 5
5
A
561 576Right-handed alpha
Helix 6
6
A
598 611Right-handed alpha
Helix 7
7
A
611 624Right-handed alpha
Helix 8
8
A
656 675Right-handed alpha
Helix 9
9
A
694 701Right-handed alpha
Helix 10
10
A
713 720Right-handed alpha
Helix 11
11
A
724 737Right-handed alpha
Helix 12
12
A
737 743Right-handed alpha
Helix 13
13
A
752 764Right-handed alpha
Helix 14
14
A
767 769Right-handed 310
Helix 15
15
A
770 775Right-handed alpha
Helix 16
16
A
806 810Right-handed 310
Helix 17
17
A
811 821Right-handed alpha
Helix 18
18
A
832 860Right-handed alpha
Helix 19
19
B
463 473Right-handed alpha
Helix 20
20
B
488 501Right-handed alpha
Helix 21
21
B
561 576Right-handed alpha
Helix 22
22
B
598 611Right-handed alpha
Helix 23
23
B
611 624Right-handed alpha
Helix 24
24
B
656 675Right-handed alpha
Helix 25
25
B
694 701Right-handed alpha
Helix 26
26
B
713 720Right-handed alpha
Helix 27
27
B
724 737Right-handed alpha
Helix 28
28
B
737 743Right-handed alpha
Helix 29
29
B
752 764Right-handed alpha
Helix 30
30
B
767 769Right-handed 310
Helix 31
31
B
770 775Right-handed alpha
Helix 32
32
B
806 810Right-handed 310
Helix 33
33
B
811 821Right-handed alpha
Helix 34
34
B
832 860Right-handed alpha
Helix 35
35
C
445 454Right-handed alpha
Helix 36
36
C
458 462Right-handed 310
Helix 37
37
C
463 473Right-handed alpha
Helix 38
38
C
477 479Right-handed 310
Helix 39
39
C
480 485Right-handed alpha
Helix 40
40
C
487 502Right-handed alpha
Helix 41
41
C
518 522Right-handed 310
Helix 42
42
C
561 576Right-handed alpha
Helix 43
43
C
598 611Right-handed alpha
Helix 44
44
C
611 624Right-handed alpha
Helix 45
45
C
656 675Right-handed alpha
Helix 46
46
C
694 701Right-handed alpha
Helix 47
47
C
713 720Right-handed alpha
Helix 48
48
C
724 737Right-handed alpha
Helix 49
49
C
737 743Right-handed alpha
Helix 50
50
C
752 764Right-handed alpha
Helix 51
51
C
767 769Right-handed 310
Helix 52
52
C
770 775Right-handed alpha
Helix 53
53
C
806 810Right-handed 310
Helix 54
54
C
811 821Right-handed alpha
Helix 55
55
C
832 860Right-handed alpha
Helix 56
56
D
458 462Right-handed 310
Helix 57
57
D
463 473Right-handed alpha
Helix 58
58
D
487 501Right-handed alpha
Helix 59
59
D
518 522Right-handed 310
Helix 60
60
D
561 576Right-handed alpha
Helix 61
61
D
598 611Right-handed alpha
Helix 62
62
D
611 624Right-handed alpha
Helix 63
63
D
656 675Right-handed alpha
Helix 64
64
D
694 701Right-handed alpha
Helix 65
65
D
713 720Right-handed alpha
Helix 66
66
D
724 737Right-handed alpha
Helix 67
67
D
737 743Right-handed alpha
Helix 68
68
D
752 764Right-handed alpha
Helix 69
69
D
767 769Right-handed 310
Helix 70
70
D
770 775Right-handed alpha
Helix 71
71
D
806 810Right-handed 310
Helix 72
72
D
811 821Right-handed alpha
Helix 73
73
D
832 859Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3CD7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 556first strand
Strand 2
A
530 546anti-parallel
Strand 3
B
530 546anti-parallel
Strand 4
B
549 556anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 639first strand
Strand 2
A
642 649anti-parallel
Strand 3
A
593 595anti-parallel
Strand 4
A
679 682anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 639first strand
Strand 2
A
642 649anti-parallel
Strand 3
A
580 590anti-parallel
Strand 4
A
703 712anti-parallel
Strand 5
A
790 800anti-parallel
Strand 6
A
777 784anti-parallel
Strand 7
A
748 749parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
635 639first strand
Strand 2
B
642 649anti-parallel
Strand 3
B
593 595anti-parallel
Strand 4
B
679 682anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
635 639first strand
Strand 2
B
642 649anti-parallel
Strand 3
B
580 590anti-parallel
Strand 4
B
703 712anti-parallel
Strand 5
B
790 800anti-parallel
Strand 6
B
777 784anti-parallel
Strand 7
B
748 749parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
549 556first strand
Strand 2
C
530 546anti-parallel
Strand 3
D
530 546anti-parallel
Strand 4
D
549 556anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
635 639first strand
Strand 2
C
642 649anti-parallel
Strand 3
C
593 595anti-parallel
Strand 4
C
679 682anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
635 639first strand
Strand 2
C
642 649anti-parallel
Strand 3
C
580 590anti-parallel
Strand 4
C
703 712anti-parallel
Strand 5
C
790 800anti-parallel
Strand 6
C
777 784anti-parallel
Strand 7
C
748 749parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
635 639first strand
Strand 2
D
642 649anti-parallel
Strand 3
D
593 595anti-parallel
Strand 4
D
679 682anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
635 639first strand
Strand 2
D
642 649anti-parallel
Strand 3
D
580 590anti-parallel
Strand 4
D
703 712anti-parallel
Strand 5
D
790 800anti-parallel
Strand 6
D
777 784anti-parallel
Strand 7
D
748 749parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il