Analysis of interatomic Contacts of Structural Units in PDB entry:
3CDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CDB entry

There are 4 chains in PDB entry 3CDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 441HIS 861
B
 GLU 441HIS 861
C
 PRO 444HIS 861
D
 GLY 458HIS 861
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 81 helices in PDB entry 3CDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
444 454Right-handed alpha
Helix 2
2
A
458 462Right-handed 310
Helix 3
3
A
463 472Right-handed alpha
Helix 4
4
A
480 485Right-handed alpha
Helix 5
5
A
487 503Right-handed alpha
Helix 6
6
A
507 512Right-handed 310
Helix 7
7
A
518 522Right-handed 310
Helix 8
8
A
561 575Right-handed alpha
Helix 9
9
A
598 611Right-handed alpha
Helix 10
10
A
611 624Right-handed alpha
Helix 11
11
A
656 675Right-handed alpha
Helix 12
12
A
694 701Right-handed alpha
Helix 13
13
A
713 720Right-handed alpha
Helix 14
14
A
724 737Right-handed alpha
Helix 15
15
A
737 743Right-handed alpha
Helix 16
16
A
752 764Right-handed alpha
Helix 17
17
A
767 769Right-handed 310
Helix 18
18
A
770 775Right-handed alpha
Helix 19
19
A
806 810Right-handed 310
Helix 20
20
A
811 822Right-handed alpha
Helix 21
21
A
832 860Right-handed alpha
Helix 22
22
B
444 454Right-handed alpha
Helix 23
23
B
458 462Right-handed 310
Helix 24
24
B
463 473Right-handed alpha
Helix 25
25
B
477 479Right-handed 310
Helix 26
26
B
480 485Right-handed alpha
Helix 27
27
B
487 503Right-handed alpha
Helix 28
28
B
518 522Right-handed 310
Helix 29
29
B
561 576Right-handed alpha
Helix 30
30
B
598 611Right-handed alpha
Helix 31
31
B
611 624Right-handed alpha
Helix 32
32
B
656 675Right-handed alpha
Helix 33
33
B
694 701Right-handed alpha
Helix 34
34
B
713 720Right-handed alpha
Helix 35
35
B
724 737Right-handed alpha
Helix 36
36
B
737 744Right-handed alpha
Helix 37
37
B
752 764Right-handed alpha
Helix 38
38
B
767 769Right-handed 310
Helix 39
39
B
770 775Right-handed alpha
Helix 40
40
B
806 810Right-handed 310
Helix 41
41
B
811 821Right-handed alpha
Helix 42
42
B
832 860Right-handed alpha
Helix 43
43
C
444 453Right-handed alpha
Helix 44
44
C
458 462Right-handed 310
Helix 45
45
C
463 473Right-handed alpha
Helix 46
46
C
477 479Right-handed 310
Helix 47
47
C
480 485Right-handed alpha
Helix 48
48
C
487 503Right-handed alpha
Helix 49
49
C
507 512Right-handed 310
Helix 50
50
C
561 575Right-handed alpha
Helix 51
51
C
598 611Right-handed alpha
Helix 52
52
C
611 624Right-handed alpha
Helix 53
53
C
656 675Right-handed alpha
Helix 54
54
C
694 701Right-handed alpha
Helix 55
55
C
713 720Right-handed alpha
Helix 56
56
C
724 737Right-handed alpha
Helix 57
57
C
737 743Right-handed alpha
Helix 58
58
C
752 764Right-handed alpha
Helix 59
59
C
767 769Right-handed 310
Helix 60
60
C
770 775Right-handed alpha
Helix 61
61
C
806 810Right-handed 310
Helix 62
62
C
811 821Right-handed alpha
Helix 63
63
C
832 860Right-handed alpha
Helix 64
64
D
463 473Right-handed alpha
Helix 65
65
D
487 501Right-handed alpha
Helix 66
66
D
505 512Right-handed 310
Helix 67
67
D
518 522Right-handed 310
Helix 68
68
D
561 576Right-handed alpha
Helix 69
69
D
598 610Right-handed alpha
Helix 70
70
D
611 624Right-handed alpha
Helix 71
71
D
656 675Right-handed alpha
Helix 72
72
D
694 701Right-handed alpha
Helix 73
73
D
713 720Right-handed alpha
Helix 74
74
D
724 737Right-handed alpha
Helix 75
75
D
737 743Right-handed alpha
Helix 76
76
D
752 764Right-handed alpha
Helix 77
77
D
767 769Right-handed 310
Helix 78
78
D
770 775Right-handed alpha
Helix 79
79
D
806 810Right-handed 310
Helix 80
80
D
811 821Right-handed alpha
Helix 81
81
D
832 860Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3CDB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 556first strand
Strand 2
A
530 546anti-parallel
Strand 3
B
530 546anti-parallel
Strand 4
B
549 556anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 631first strand
Strand 2
A
642 650anti-parallel
Strand 3
A
593 595anti-parallel
Strand 4
A
679 682anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 639first strand
Strand 2
A
642 650anti-parallel
Strand 3
A
580 590anti-parallel
Strand 4
A
703 712anti-parallel
Strand 5
A
790 800anti-parallel
Strand 6
A
777 784anti-parallel
Strand 7
A
748 749parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
635 639first strand
Strand 2
B
642 649anti-parallel
Strand 3
B
593 595anti-parallel
Strand 4
B
679 682anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
635 639first strand
Strand 2
B
642 649anti-parallel
Strand 3
B
580 590anti-parallel
Strand 4
B
703 712anti-parallel
Strand 5
B
790 800anti-parallel
Strand 6
B
777 784anti-parallel
Strand 7
B
748 749parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
549 556first strand
Strand 2
C
530 546anti-parallel
Strand 3
D
530 546anti-parallel
Strand 4
D
549 556anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
635 639first strand
Strand 2
C
642 649anti-parallel
Strand 3
C
593 595anti-parallel
Strand 4
C
679 682anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
635 639first strand
Strand 2
C
642 649anti-parallel
Strand 3
C
580 590anti-parallel
Strand 4
C
703 712anti-parallel
Strand 5
C
790 800anti-parallel
Strand 6
C
777 784anti-parallel
Strand 7
C
748 749parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
630 631first strand
Strand 2
D
642 650anti-parallel
Strand 3
D
593 595anti-parallel
Strand 4
D
679 682anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
635 639first strand
Strand 2
D
642 650anti-parallel
Strand 3
D
580 590anti-parallel
Strand 4
D
703 712anti-parallel
Strand 5
D
790 800anti-parallel
Strand 6
D
777 784anti-parallel
Strand 7
D
748 749parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il