Analysis of interatomic Contacts of Structural Units in PDB entry:
3CDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CDJ entry

There is 1 chain in PDB entry 3CDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 21ALA 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3CDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
90 94Right-handed 310
Helix 2
2
A
110 123Right-handed alpha
Helix 3
3
A
124 126Right-handed 310
Helix 4
4
A
148 164Right-handed alpha
Helix 5
5
A
222 250Right-handed alpha
Helix 6
6
A
427 436Right-handed alpha
Helix 7
7
A
463 476Right-handed alpha
Helix 8
8
A
505 509Right-handed 310
Helix 9
9
A
540 561Right-handed alpha
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There are 4 sheets in PDB entry 3CDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
37 43anti-parallel
Strand 3
A
33 34anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
37 43anti-parallel
Strand 3
A
52 58anti-parallel
Strand 4
A
61 68anti-parallel
Strand 5
A
134 142anti-parallel
Strand 6
A
82 88parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
173 180anti-parallel
Strand 3
A
198 204anti-parallel
Strand 4
A
209 219anti-parallel
Strand 5
A
525 532anti-parallel
Strand 6
A
514 520anti-parallel
Strand 7
A
485 494anti-parallel
Strand 8
A
497 501anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 354first strand
Strand 2
A
362 368anti-parallel
Strand 3
A
371 380anti-parallel
Strand 4
A
447 456anti-parallel
Strand 5
A
399 404parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il