Analysis of interatomic Contacts of Structural Units in PDB entry:
3CF2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3CF2 entry

There are 4 chains in PDB entry 3CF2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 21	ALA 759
B	ASN 21	ALA 759
C	ASN 21	ALA 759
D	ASN 21	ALA 759

There are124 helices in PDB entry 3CF2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	42	49	Right-handed alpha
Helix 2	2	A	61	65	Right-handed 310
Helix 3	3	A	85	91	Right-handed alpha
Helix 4	4	A	129	134	Right-handed alpha
Helix 5	5	A	134	140	Right-handed alpha
Helix 6	6	A	202	206	Right-handed 310
Helix 7	7	A	212	226	Right-handed alpha
Helix 8	8	A	227	231	Right-handed 310
Helix 9	9	A	250	260	Right-handed alpha
Helix 10	10	A	271	276	Right-handed alpha
Helix 11	11	A	280	294	Right-handed alpha
Helix 12	12	A	305	309	Right-handed 310
Helix 13	13	A	320	330	Right-handed alpha
Helix 14	14	A	330	335	Right-handed alpha
Helix 15	15	A	336	339	Right-handed 310
Helix 16	16	A	373	384	Right-handed alpha
Helix 17	17	A	395	403	Right-handed alpha
Helix 18	18	A	407	430	Right-handed alpha
Helix 19	19	A	431	433	Right-handed 310
Helix 20	20	A	438	445	Right-handed alpha
Helix 21	21	A	450	457	Right-handed alpha
Helix 22	22	A	482	490	Right-handed alpha
Helix 23	23	A	500	504	Right-handed 310
Helix 24	24	A	523	534	Right-handed alpha
Helix 25	25	A	543	549	Right-handed alpha
Helix 26	26	A	555	568	Right-handed alpha
Helix 27	27	A	578	582	Right-handed 310
Helix 28	28	A	598	610	Right-handed alpha
Helix 29	29	A	630	635	Right-handed alpha
Helix 30	30	A	652	656	Right-handed alpha
Helix 31	31	A	687	704	Right-handed alpha
Helix 32	32	B	42	49	Right-handed alpha
Helix 33	33	B	61	65	Right-handed 310
Helix 34	34	B	85	91	Right-handed alpha
Helix 35	35	B	129	134	Right-handed alpha
Helix 36	36	B	134	140	Right-handed alpha
Helix 37	37	B	202	206	Right-handed 310
Helix 38	38	B	212	226	Right-handed alpha
Helix 39	39	B	227	231	Right-handed 310
Helix 40	40	B	250	260	Right-handed alpha
Helix 41	41	B	271	276	Right-handed alpha
Helix 42	42	B	280	294	Right-handed alpha
Helix 43	43	B	305	309	Right-handed 310
Helix 44	44	B	320	330	Right-handed alpha
Helix 45	45	B	330	335	Right-handed alpha
Helix 46	46	B	336	339	Right-handed 310
Helix 47	47	B	373	384	Right-handed alpha
Helix 48	48	B	395	403	Right-handed alpha
Helix 49	49	B	407	430	Right-handed alpha
Helix 50	50	B	431	433	Right-handed 310
Helix 51	51	B	438	445	Right-handed alpha
Helix 52	52	B	450	457	Right-handed alpha
Helix 53	53	B	482	490	Right-handed alpha
Helix 54	54	B	500	504	Right-handed 310
Helix 55	55	B	523	534	Right-handed alpha
Helix 56	56	B	543	549	Right-handed alpha
Helix 57	57	B	555	568	Right-handed alpha
Helix 58	58	B	578	582	Right-handed 310
Helix 59	59	B	598	610	Right-handed alpha
Helix 60	60	B	630	635	Right-handed alpha
Helix 61	61	B	652	656	Right-handed alpha
Helix 62	62	B	687	704	Right-handed alpha
Helix 63	63	C	42	49	Right-handed alpha
Helix 64	64	C	61	65	Right-handed 310
Helix 65	65	C	85	91	Right-handed alpha
Helix 66	66	C	129	134	Right-handed alpha
Helix 67	67	C	134	140	Right-handed alpha
Helix 68	68	C	202	206	Right-handed 310
Helix 69	69	C	212	226	Right-handed alpha
Helix 70	70	C	227	231	Right-handed 310
Helix 71	71	C	250	260	Right-handed alpha
Helix 72	72	C	271	276	Right-handed alpha
Helix 73	73	C	280	294	Right-handed alpha
Helix 74	74	C	305	309	Right-handed 310
Helix 75	75	C	320	330	Right-handed alpha
Helix 76	76	C	330	335	Right-handed alpha
Helix 77	77	C	336	339	Right-handed 310
Helix 78	78	C	373	384	Right-handed alpha
Helix 79	79	C	395	403	Right-handed alpha
Helix 80	80	C	407	430	Right-handed alpha
Helix 81	81	C	431	433	Right-handed 310
Helix 82	82	C	438	445	Right-handed alpha
Helix 83	83	C	450	457	Right-handed alpha
Helix 84	84	C	482	490	Right-handed alpha
Helix 85	85	C	500	504	Right-handed 310
Helix 86	86	C	523	534	Right-handed alpha
Helix 87	87	C	543	549	Right-handed alpha
Helix 88	88	C	555	568	Right-handed alpha
Helix 89	89	C	578	582	Right-handed 310
Helix 90	90	C	598	610	Right-handed alpha
Helix 91	91	C	630	635	Right-handed alpha
Helix 92	92	C	652	656	Right-handed alpha
Helix 93	93	C	687	704	Right-handed alpha
Helix 94	94	D	42	49	Right-handed alpha
Helix 95	95	D	61	65	Right-handed 310
Helix 96	96	D	85	91	Right-handed alpha
Helix 97	97	D	129	134	Right-handed alpha
Helix 98	98	D	134	140	Right-handed alpha
Helix 99	99	D	202	206	Right-handed 310
Helix 100	100	D	212	226	Right-handed alpha
Helix 101	101	D	227	231	Right-handed 310
Helix 102	102	D	250	260	Right-handed alpha
Helix 103	103	D	271	276	Right-handed alpha
Helix 104	104	D	280	294	Right-handed alpha
Helix 105	105	D	305	309	Right-handed 310
Helix 106	106	D	320	330	Right-handed alpha
Helix 107	107	D	330	335	Right-handed alpha
Helix 108	108	D	336	339	Right-handed 310
Helix 109	109	D	373	384	Right-handed alpha
Helix 110	110	D	395	403	Right-handed alpha
Helix 111	111	D	407	430	Right-handed alpha
Helix 112	112	D	431	433	Right-handed 310
Helix 113	113	D	438	445	Right-handed alpha
Helix 114	114	D	450	457	Right-handed alpha
Helix 115	115	D	482	490	Right-handed alpha
Helix 116	116	D	500	504	Right-handed 310
Helix 117	117	D	523	534	Right-handed alpha
Helix 118	118	D	543	549	Right-handed alpha
Helix 119	119	D	555	568	Right-handed alpha
Helix 120	120	D	578	582	Right-handed 310
Helix 121	121	D	598	610	Right-handed alpha
Helix 122	122	D	630	635	Right-handed alpha
Helix 123	123	D	652	656	Right-handed alpha
Helix 124	124	D	687	704	Right-handed alpha

There are 28 sheets in PDB entry 3CF2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	99	104	anti-parallel
Strand 3	A	56	60	anti-parallel
Strand 4	A	69	73	anti-parallel
Strand 5	A	38	41	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	161	168	anti-parallel
Strand 3	A	151	154	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	173	175	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	270	first strand
Strand 2	A	299	304	parallel
Strand 3	A	341	346	parallel
Strand 4	A	240	244	parallel
Strand 5	A	365	368	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	446	447	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	642	644	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	541	first strand
Strand 2	A	572	575	parallel
Strand 3	A	617	620	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	99	104	anti-parallel
Strand 3	B	56	60	anti-parallel
Strand 4	B	69	73	anti-parallel
Strand 5	B	38	41	parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	161	168	anti-parallel
Strand 3	B	151	154	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	173	175	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	299	304	parallel
Strand 3	B	341	346	parallel
Strand 4	B	240	244	parallel
Strand 5	B	365	368	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	446	447	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	517	first strand
Strand 2	B	642	644	parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	541	first strand
Strand 2	B	572	575	parallel
Strand 3	B	617	620	parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	27	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	56	60	anti-parallel
Strand 4	C	69	73	anti-parallel
Strand 5	C	38	41	parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	161	168	anti-parallel
Strand 3	C	151	154	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	173	175	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	299	304	parallel
Strand 3	C	341	346	parallel
Strand 4	C	240	244	parallel
Strand 5	C	365	368	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	390	first strand
Strand 2	C	446	447	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	515	517	first strand
Strand 2	C	642	644	parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	541	first strand
Strand 2	C	572	575	parallel
Strand 3	C	617	620	parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	27	first strand
Strand 2	D	99	104	anti-parallel
Strand 3	D	56	60	anti-parallel
Strand 4	D	69	73	anti-parallel
Strand 5	D	38	41	parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	161	168	anti-parallel
Strand 3	D	151	154	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	173	175	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	270	first strand
Strand 2	D	299	304	parallel
Strand 3	D	341	346	parallel
Strand 4	D	240	244	parallel
Strand 5	D	365	368	parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	390	first strand
Strand 2	D	446	447	parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	517	first strand
Strand 2	D	642	644	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	541	first strand
Strand 2	D	572	575	parallel
Strand 3	D	617	620	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3CF2

Analysis of interatomic Contacts of Structural Units in PDB entry:
3CF2