Analysis of interatomic Contacts of Structural Units in PDB entry:
3CF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CF6 entry

There are 2 chains in PDB entry 3CF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 MET 310PRO 990
R
 GLU 3GLN 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3CF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
310 316Right-handed alpha
Helix 2
2
E
317 321Right-handed 310
Helix 3
3
E
322 334Right-handed alpha
Helix 4
4
E
335 340Right-handed 310
Helix 5
5
E
343 352Right-handed alpha
Helix 6
6
E
404 411Right-handed alpha
Helix 7
7
E
432 439Right-handed alpha
Helix 8
8
E
486 497Right-handed alpha
Helix 9
9
E
501 503Right-handed 310
Helix 10
10
E
504 523Right-handed alpha
Helix 11
11
E
524 537Right-handed alpha
Helix 12
12
E
544 571Right-handed alpha
Helix 13
13
E
572 576Right-handed 310
Helix 14
14
E
577 599Right-handed alpha
Helix 15
15
E
603 612Right-handed alpha
Helix 16
16
E
673 686Right-handed alpha
Helix 17
17
E
712 716Right-handed 310
Helix 18
18
E
728 733Right-handed 310
Helix 19
19
E
736 740Right-handed 310
Helix 20
20
E
746 751Right-handed alpha
Helix 21
21
E
754 772Right-handed alpha
Helix 22
22
E
774 784Right-handed alpha
Helix 23
23
E
785 788Right-handed 310
Helix 24
24
E
792 815Right-handed alpha
Helix 25
25
E
818 839Right-handed alpha
Helix 26
26
E
841 853Right-handed alpha
Helix 27
27
E
854 859Right-handed alpha
Helix 28
28
E
860 866Right-handed alpha
Helix 29
29
E
868 881Right-handed alpha
Helix 30
30
E
884 898Right-handed alpha
Helix 31
31
E
905 920Right-handed alpha
Helix 32
32
E
930 947Right-handed alpha
Helix 33
33
E
962 970Right-handed alpha
Helix 34
34
E
977 989Right-handed alpha
Helix 35
35
R
15 25Right-handed alpha
Helix 36
36
R
64 75Right-handed alpha
Helix 37
37
R
86 92Right-handed alpha
Helix 38
38
R
92 104Right-handed alpha
Helix 39
39
R
127 134Right-handed alpha
Helix 40
40
R
153 164Right-handed alpha
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There are 6 sheets in PDB entry 3CF6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
355 359first strand
Strand 2
E
425 431anti-parallel
Strand 3
E
375 381anti-parallel
Strand 4
E
402 403anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
365 367first strand
Strand 2
E
417 420anti-parallel
Strand 3
E
383 388anti-parallel
Strand 4
E
392 398anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
447 451first strand
Strand 2
E
454 461anti-parallel
Strand 3
E
480 485anti-parallel
Strand 4
E
927 929anti-parallel
Strand 5
E
923 924anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
651 657first strand
Strand 2
E
663 669anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
702 704first strand
Strand 2
E
691 696anti-parallel
Strand 3
E
721 726anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
41 43first strand
Strand 2
R
52 57anti-parallel
Strand 3
R
4 9parallel
Strand 4
R
77 83parallel
Strand 5
R
111 116parallel
Strand 6
R
143 145parallel
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