Analysis of interatomic Contacts of Structural Units in PDB entry:
3CGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CGE entry

There are 2 chains in PDB entry 3CGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 444
B
 MET 1GLU 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3CGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 23Right-handed alpha
Helix 2
2
A
40 42Right-handed 310
Helix 3
3
A
43 49Right-handed alpha
Helix 4
4
A
54 59Right-handed 310
Helix 5
5
A
62 69Right-handed alpha
Helix 6
6
A
134 148Right-handed alpha
Helix 7
7
A
159 172Right-handed alpha
Helix 8
8
A
190 204Right-handed alpha
Helix 9
9
A
248 252Right-handed 310
Helix 10
10
A
281 284Right-handed 310
Helix 11
11
A
299 315Right-handed alpha
Helix 12
12
A
343 351Right-handed alpha
Helix 13
13
A
397 411Right-handed alpha
Helix 14
14
A
414 421Right-handed 310
Helix 15
15
A
434 443Right-handed alpha
Helix 16
16
B
9 22Right-handed alpha
Helix 17
17
B
40 42Right-handed 310
Helix 18
18
B
43 49Right-handed alpha
Helix 19
19
B
54 59Right-handed 310
Helix 20
20
B
62 69Right-handed alpha
Helix 21
21
B
134 148Right-handed alpha
Helix 22
22
B
159 172Right-handed alpha
Helix 23
23
B
190 204Right-handed alpha
Helix 24
24
B
248 252Right-handed 310
Helix 25
25
B
281 284Right-handed 310
Helix 26
26
B
299 315Right-handed alpha
Helix 27
27
B
343 351Right-handed alpha
Helix 28
28
B
397 411Right-handed alpha
Helix 29
29
B
414 421Right-handed 310
Helix 30
30
B
434 443Right-handed alpha
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There are 14 sheets in PDB entry 3CGE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
27 31parallel
Strand 3
A
2 6parallel
Strand 4
A
107 110parallel
Strand 5
A
277 279parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 84first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
100 104anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
244 246anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
237 240parallel
Strand 3
A
152 156parallel
Strand 4
A
175 179parallel
Strand 5
A
207 209parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
223 228anti-parallel
Strand 3
A
232 234anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
294 295anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 332first strand
Strand 2
A
335 341anti-parallel
Strand 3
A
387 394anti-parallel
Strand 4
A
373 381anti-parallel
Strand 5
A
354 362anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
27 31parallel
Strand 3
B
2 6parallel
Strand 4
B
107 110parallel
Strand 5
B
277 279parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 84first strand
Strand 2
B
89 94anti-parallel
Strand 3
B
100 104anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
244 246anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
B
237 240parallel
Strand 3
B
152 156parallel
Strand 4
B
175 179parallel
Strand 5
B
207 209parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 218first strand
Strand 2
B
225 228anti-parallel
Strand 3
B
232 234anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 287first strand
Strand 2
B
294 295anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 332first strand
Strand 2
B
335 341anti-parallel
Strand 3
B
387 394anti-parallel
Strand 4
B
373 381anti-parallel
Strand 5
B
354 362anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il