Analysis of interatomic Contacts of Structural Units in PDB entry:
3CJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CJ8 entry

There are 3 chains in PDB entry 3CJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ASP 218
B
 ASN -1ILE 216
C
 ASN -1ASP 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3CJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 13Right-handed alpha
Helix 2
2
A
51 61Right-handed alpha
Helix 3
3
B
1 13Right-handed alpha
Helix 4
4
B
27 30Right-handed 310
Helix 5
5
B
51 61Right-handed alpha
Helix 6
6
C
1 13Right-handed alpha
Helix 7
7
C
51 61Right-handed alpha
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There are 12 sheets in PDB entry 3CJ8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
44 50anti-parallel
Strand 3
A
18 25anti-parallel
Strand 4
A
65 72anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
108 109parallel
Strand 3
A
126 127parallel
Strand 4
A
144 145parallel
Strand 5
A
170 171parallel
Strand 6
A
188 189parallel
Strand 7
A
203 206parallel
Strand 8
A
211 215anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
114 115parallel
Strand 3
A
132 133parallel
Strand 4
A
150 151parallel
Strand 5
A
176 177parallel
Strand 6
A
194 195parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
120 121parallel
Strand 3
A
138 139parallel
Strand 4
A
164 165parallel
Strand 5
A
182 183parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
44 50anti-parallel
Strand 3
B
18 25anti-parallel
Strand 4
B
65 72anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
108 109parallel
Strand 3
B
126 127parallel
Strand 4
B
144 145parallel
Strand 5
B
170 171parallel
Strand 6
B
188 189parallel
Strand 7
B
203 206parallel
Strand 8
B
211 215anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
114 115parallel
Strand 3
B
132 133parallel
Strand 4
B
150 151parallel
Strand 5
B
176 177parallel
Strand 6
B
194 195parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
120 121parallel
Strand 3
B
138 139parallel
Strand 4
B
164 165parallel
Strand 5
B
182 183parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 40first strand
Strand 2
C
44 50anti-parallel
Strand 3
C
18 25anti-parallel
Strand 4
C
65 72anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 91first strand
Strand 2
C
108 109parallel
Strand 3
C
126 127parallel
Strand 4
C
144 145parallel
Strand 5
C
170 171parallel
Strand 6
C
188 189parallel
Strand 7
C
203 206parallel
Strand 8
C
211 215anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 97first strand
Strand 2
C
114 115parallel
Strand 3
C
132 133parallel
Strand 4
C
150 151parallel
Strand 5
C
176 177parallel
Strand 6
C
194 195parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 103first strand
Strand 2
C
120 121parallel
Strand 3
C
138 139parallel
Strand 4
C
164 165parallel
Strand 5
C
182 183parallel
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