Analysis of interatomic Contacts of Structural Units in PDB entry:
3CJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CJ9 entry

There is 1 chain in PDB entry 3CJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 36PHE 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3CJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 63Right-handed 310
Helix 2
2
A
81 86Right-handed 310
Helix 3
3
A
89 95Right-handed alpha
Helix 4
4
A
96 107Right-handed alpha
Helix 5
5
A
108 114Right-handed 310
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
132 149Right-handed alpha
Helix 8
8
A
161 177Right-handed alpha
Helix 9
9
A
219 221Right-handed 310
Helix 10
10
A
244 260Right-handed alpha
Helix 11
11
A
276 281Right-handed alpha
Helix 12
12
A
306 316Right-handed alpha
Helix 13
13
A
347 358Right-handed alpha
Helix 14
14
A
365 379Right-handed alpha
Helix 15
15
A
380 387Right-handed alpha
Helix 16
16
A
394 396Right-handed 310
Helix 17
17
A
397 411Right-handed alpha
Helix 18
18
A
416 421Right-handed alpha
Helix 19
19
A
436 445Right-handed alpha
Helix 20
20
A
452 459Right-handed 310
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There are 5 sheets in PDB entry 3CJ9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 76first strand
Strand 2
A
51 59anti-parallel
Strand 3
A
38 46anti-parallel
Strand 4
A
116 121parallel
Strand 5
A
153 159parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
188 189anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 228first strand
Strand 2
A
231 241anti-parallel
Strand 3
A
206 212anti-parallel
Strand 4
A
198 202anti-parallel
Strand 5
A
342 346parallel
Strand 6
A
423 425parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 275first strand
Strand 2
A
298 302anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
432 433anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il