Analysis of interatomic Contacts of Structural Units in PDB entry:
3CJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CJD entry

There are 2 chains in PDB entry 3CJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9ARG 197
B
 ALA 10ARG 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3CJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 28Right-handed alpha
Helix 2
2
A
29 32Right-handed 310
Helix 3
3
A
33 42Right-handed alpha
Helix 4
4
A
44 52Right-handed alpha
Helix 5
5
A
54 75Right-handed alpha
Helix 6
6
A
85 104Right-handed alpha
Helix 7
7
A
104 114Right-handed alpha
Helix 8
8
A
123 145Right-handed alpha
Helix 9
9
A
149 173Right-handed alpha
Helix 10
10
A
180 182Right-handed 310
Helix 11
11
A
183 194Right-handed alpha
Helix 12
12
B
10 28Right-handed alpha
Helix 13
13
B
29 32Right-handed 310
Helix 14
14
B
33 42Right-handed alpha
Helix 15
15
B
44 52Right-handed alpha
Helix 16
16
B
54 76Right-handed alpha
Helix 17
17
B
85 104Right-handed alpha
Helix 18
18
B
104 114Right-handed alpha
Helix 19
19
B
123 145Right-handed alpha
Helix 20
20
B
149 173Right-handed alpha
Helix 21
21
B
180 182Right-handed 310
Helix 22
22
B
183 193Right-handed alpha
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There are no sheets in PDB entry 3CJD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il