Analysis of interatomic Contacts of Structural Units in PDB entry:
3CJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CJI entry

There are 4 chains in PDB entry 3CJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LYS 258
B
 GLY 1PHE 238
C
 ASP 12GLY 279
D
 ARG 14LYS 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 3CJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
32 38Right-handed alpha
Helix 3
3
A
107 114Right-handed alpha
Helix 4
4
A
162 164Right-handed 310
Helix 5
5
A
224 228Right-handed 310
Helix 6
6
B
44 49Right-handed alpha
Helix 7
7
B
99 106Right-handed alpha
Helix 8
8
B
145 150Right-handed alpha
Helix 9
9
B
233 238Right-handed 310
Helix 10
10
C
57 61Right-handed 310
Helix 11
11
C
86 92Right-handed alpha
Helix 12
12
C
93 96Right-handed 310
Helix 13
13
C
98 106Right-handed alpha
Helix 14
14
C
151 159Right-handed alpha
Helix 15
15
C
164 170Right-handed alpha
Helix 16
16
C
195 202Right-handed 310
Helix 17
17
D
26 31Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 3CJI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
B
164 169anti-parallel
Strand 3
B
115 121anti-parallel
Strand 4
B
213 220anti-parallel
Strand 5
B
52 53anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
B
164 169anti-parallel
Strand 3
B
115 121anti-parallel
Strand 4
B
213 220anti-parallel
Strand 5
B
72 74anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
216 220anti-parallel
Strand 4
A
73 74anti-parallel
Strand 5
A
216 220anti-parallel
Strand 6
A
41 49parallel
Strand 7
A
234 249anti-parallel
Strand 8
B
40 41anti-parallel
Strand 9
A
234 249anti-parallel
Strand 10
A
116 129anti-parallel
Strand 11
A
178 182anti-parallel
Strand 12
A
116 129anti-parallel
Strand 13
A
191 192anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
80 81anti-parallel
Strand 3
A
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
C
186 189anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
157 160anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
D
33 34parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
69 70anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 88first strand
Strand 2
B
193 203anti-parallel
Strand 3
B
128 136anti-parallel
Strand 4
B
153 158anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
108 112anti-parallel
Strand 3
B
225 229anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 19first strand
Strand 2
C
22 26anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 55first strand
Strand 2
C
258 272anti-parallel
Strand 3
C
108 120anti-parallel
Strand 4
C
228 229anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 68first strand
Strand 2
C
258 272anti-parallel
Strand 3
C
108 120anti-parallel
Strand 4
C
214 219anti-parallel
Strand 5
C
32 35parallel
Strand 6
D
69 72anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
236 247anti-parallel
Strand 3
C
128 137anti-parallel
Strand 4
C
204 208anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il