Analysis of interatomic Contacts of Structural Units in PDB entry:
3CJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CJP entry

There are 2 chains in PDB entry 3CJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ILE 264
B
 LEU 3ILE 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 3CJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 26Right-handed alpha
Helix 2
2
A
38 42Right-handed 310
Helix 3
3
A
44 60Right-handed alpha
Helix 4
4
A
66 84Right-handed alpha
Helix 5
5
A
99 111Right-handed alpha
Helix 6
6
A
128 131Right-handed 310
Helix 7
7
A
132 142Right-handed alpha
Helix 8
8
A
156 170Right-handed alpha
Helix 9
9
A
179 183Right-handed 310
Helix 10
10
A
184 195Right-handed alpha
Helix 11
11
A
207 218Right-handed alpha
Helix 12
12
A
232 244Right-handed alpha
Helix 13
13
A
246 255Right-handed alpha
Helix 14
14
A
255 263Right-handed alpha
Helix 15
15
B
14 26Right-handed alpha
Helix 16
16
B
38 42Right-handed 310
Helix 17
17
B
44 60Right-handed alpha
Helix 18
18
B
67 84Right-handed alpha
Helix 19
19
B
99 111Right-handed alpha
Helix 20
20
B
112 115Right-handed 310
Helix 21
21
B
128 131Right-handed 310
Helix 22
22
B
132 142Right-handed alpha
Helix 23
23
B
156 170Right-handed alpha
Helix 24
24
B
179 183Right-handed 310
Helix 25
25
B
184 195Right-handed alpha
Helix 26
26
B
207 218Right-handed alpha
Helix 27
27
B
232 244Right-handed alpha
Helix 28
28
B
246 255Right-handed alpha
Helix 29
29
B
255 263Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3CJP. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
29 33parallel
Strand 3
A
88 92parallel
Strand 4
A
118 122parallel
Strand 5
A
147 149parallel
Strand 6
A
175 177parallel
Strand 7
A
198 201parallel
Strand 8
A
222 223parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
29 33parallel
Strand 3
B
88 92parallel
Strand 4
B
118 122parallel
Strand 5
B
147 149parallel
Strand 6
B
175 177parallel
Strand 7
B
198 201parallel
Strand 8
B
222 223parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il